Warning: no access to tty (Bad file descriptor).
Thus no job control in this shell.
set sim = 1SUO_apo
set mpirun = mpirun -np 32 -machinefile /uufs/updraft.arches/host/var/torque/aux//27093.uprm.privatearch.arches
set pmemd = ~/pmemd-a10-updraft 
set cur = 27
set pre = 26
cd ~/biodata2/P450/1SUO_apo
mpirun -np 32 -machinefile /uufs/updraft.arches/host/var/torque/aux//27093.uprm.privatearch.arches /uufs/chpc.utah.edu/common/home/u0181375/pmemd-a10-updraft -O -i mdin -o mdout.27 -p prmtop -c restrt.26 -r restrt.27 -x traj.27 -e ener.27
Warning: Permanently added 'up064,172.17.22.64' (RSA) to the list of known hosts.
Warning: Permanently added 'up049,172.17.22.49' (RSA) to the list of known hosts.
Warning: Permanently added 'up066,172.17.22.66' (RSA) to the list of known hosts.
=>> PBS: job killed: walltime 86429 exceeded limit 86400
Terminated
Killed by signal 15.
Killed by signal 15.
Killed by signal 15.