
#ptraj GAAC-ions.topo

trajin GAAC3-strip.crd

#parm GAAC-nowater.topo
reference parmindex 0 /uufs/chpc.utah.edu/common/home/u0181375/dirs/biodata8/cheatham/anton-abc/GAAC/avgpdb/avg_0-10us-ions.pdb
rms reference mass :1-36 out tmprms.dat time 50

strip :37-99999

average avg0.pdb pdb

