Raw data from the initial Anton simulation of d(GCACGAACGAACGAACGC),
  ~11 microseconds

workdir/		- Raw data from Anton run
GAAC/			- control files for Anton run
avgpdb/			- average PDBs over different time windows
inputs/			- AMBER files for equilibration
analysis/		- various analyses

movie*			- some MPEG movies
process-anton-vmd.csh	- convert Anton->DCD

c-GAAC.*		- Curves output
GAAC-avg.pdb		- average PDB

GAAC.topo		- full topology
GAAC.coords		- initial coords
GAAC.coords.rand	
GAAC.coords.rand2	
GAAC.dcd.*		- converted full trajectories at 50 ps intervals
			  (see workdir/ for raw Anton output)
image			- script to image full trajectories


GAAC-ions.coords	- DNA + ions only
GAAC-ions.topo		- DNA + ions only
ions.*			- DNA + ions only topology/pdbs
GAAC-strip.crd		- DNA + ions only trajectory
GAAC-strip.trj@		-  symlink to above
GAAC-strip-ions.crd.gz	-  (ascii)
GAAC-strip.netcdf	-  (netcdf)

GAAC-strip-noions.crd	- DNA only
invacuo.*		- DNA only topology/pdbs