CPPTRAJ: Trajectory Analysis. V15.00
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| Date/time: 02/10/16  13:33:56
| Available memory: 37780.9 MB

INPUT: Reading Input from file pt-prepare.in
  [parm ../../../tip3p/ff12sb/run1/build/full.topo.hmr]
	Reading '../../../tip3p/ff12sb/run1/build/full.topo.hmr' as Amber Topology
  [trajin ../ctraj.c1 start 1 stop 1]
	Reading '../ctraj.c1' as Amber NetCDF
  [trajout firstframe.crds restart]
	Writing 'firstframe.crds' as Amber Restart
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES:
 0: 'full.topo.hmr', 3301 atoms, 1088 res, box: Orthogonal, 1087 mol, 1075 solvent, 1 frames

INPUT TRAJECTORIES:
 0: 'ctraj.c1' is a NetCDF AMBER trajectory, Parm full.topo.hmr (Orthogonal box) (reading 1 of 49913)
  Coordinate processing will occur on 1 frames.

OUTPUT TRAJECTORIES:
  'firstframe.crds' is an AMBER restart file, Parm full.topo.hmr: Writing 1 frames (1-Last, 1)
TIME: Run Initialization took 0.0000 seconds.

BEGIN TRAJECTORY PROCESSING:
----- ctraj.c1 (1-1, 1) -----
100% Complete.

Read 1 frames and processed 1 frames.
TIME: Trajectory processing: 0.3200 s
TIME: Avg. throughput= 3.1246 frames / second.

ACTION OUTPUT:
---------- RUN END ---------------------------------------------------
TIME: Total execution time: 0.3480 seconds.
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To cite CPPTRAJ use:
Daniel R. Roe and Thomas E. Cheatham, III, "PTRAJ and CPPTRAJ: Software for
  Processing and Analysis of Molecular Dynamics Trajectory Data". J. Chem.
  Theory Comput., 2013, 9 (7), pp 3084-3095.