/^^^/ /] / ] / ] _______/ ]___ / ] / \_____/ / _/ [@] \ \ \ /.. | | ] VVVvvv\ | | _/\ ] P A R M E D | / \ ] AAA^^^^^ / \] \_________\ \_____/ \ \ \____\ ParmEd: a Parameter file Editor ['../../../../../scripts/parmed_dacP_dinuc.in'] Reading actions from ../../../../../scripts/parmed_dacP_dinuc.in Adding prmtop tmp.topo to parm list. tmp.topo is the active parm. Changing :2@OP1 Lennard-Jones well depth from 0.2100 to 0.2100 (kal/mol) and radius from 1.6612 to 1.7493 (Angstroms) Changing :2@OP2 Lennard-Jones well depth from 0.2100 to 0.2100 (kal/mol) and radius from 1.7493 to 1.7493 (Angstroms) Changing :2@O5' Lennard-Jones well depth from 0.1700 to 0.1700 (kal/mol) and radius from 1.6837 to 1.7718 (Angstroms) Changing :1@O3' Lennard-Jones well depth from 0.1700 to 0.1700 (kal/mol) and radius from 1.7718 to 1.7718 (Angstroms) Making atoms @O4' into a new LJ atom type Outputting Amber topology file full.topo.hmr Done!