[?1034h /^^^/ /] / ] / ] _______/ ]___ / ] / \_____/ / _/ [@] \ \ \ /.. | | ] VVVvvv\ | | _/\ ] P A R M E D | / \ ] AAA^^^^^ / \] \_________\ \_____/ \ \ \____\ ParmEd: a Parameter file Editor ['parmed.in'] Reading actions from parmed.in Adding prmtop tmp.topo.hmr to parm list. tmp.topo.hmr is the active parm. Changing CHARGE of atom # 2 (O5') from -0.622300000549 to -0.5949 Changing CHARGE of atom # 1 (HO5') from 0.4295 to 0.4119 Changing CHARGE of atom # 3 (C5') from 0.0558 to 0.0114 Changing CHARGE of atom # 4 (H5') from 0.0679 to 0.0716 Changing CHARGE of atom # 5 (H5'') from 0.0679 to 0.0716 Changing CHARGE of atom # 6 (C4') from 0.1065 to 0.1276 Changing CHARGE of atom # 7 (H4') from 0.1174 to 0.0913 Changing CHARGE of atom # 8 (O4') from -0.3548 to -0.4180 Changing CHARGE of atom # 9 (C1') from 0.0394 to 0.1021 Changing CHARGE of atom # 10 (H1') from 0.2007 to 0.1376 Changing CHARGE of atom # 11 (N9) from -0.0251 to -0.0079 Changing CHARGE of atom # 12 (C8) from 0.2006 to 0.1203 Changing CHARGE of atom # 13 (H8) from 0.1553 to 0.1780 Changing CHARGE of atom # 14 (N7) from -0.607300000549 to -0.5842 Changing CHARGE of atom # 15 (C5) from 0.0515 to 0.0409 Changing CHARGE of atom # 16 (C6) from 0.700900001646 to 0.7037 Changing CHARGE of atom # 17 (N6) from -0.901900001646 to -0.9380 Changing CHARGE of atom # 18 (H61) from 0.4115 to 0.4095 Changing CHARGE of atom # 19 (H62) from 0.4115 to 0.4095 Changing CHARGE of atom # 20 (N1) from -0.761500002744 to -0.7686 Changing CHARGE of atom # 21 (C2) from 0.587500002744 to 0.5611 Changing CHARGE of atom # 22 (H2) from 0.0473 to 0.0569 Changing CHARGE of atom # 23 (N3) from -0.699699999451 to -0.7264 Changing CHARGE of atom # 24 (C4) from 0.3053 to 0.3693 Changing CHARGE of atom # 25 (C3') from 0.2022 to 0.2790 Changing CHARGE of atom # 26 (H3') from 0.0615 to 0.0452 Changing CHARGE of atom # 27 (C2') from 0.067 to 0.1739 Changing CHARGE of atom # 28 (H2') from 0.0972 to 0.0703 Changing CHARGE of atom # 29 (O2') from -0.613900001646 to -0.6164 Changing CHARGE of atom # 30 (HO2') from 0.4186 to 0.3945 Changing CHARGE of atom # 31 (O3') from -0.5246 to -0.5435 Changing CHARGE of atom # 32 (P) from 1.1662000022 to 1.2352 Changing CHARGE of atom # 33 (OP1) from -0.776 to -0.7572 Changing CHARGE of atom # 34 (OP2) from -0.776 to -0.7819 Changing CHARGE of atom # 35 (O5') from -0.4989 to -0.4838 Changing CHARGE of atom # 36 (C5') from 0.0558 to 0.0167 Changing CHARGE of atom # 37 (H5') from 0.0679 to 0.0822 Changing CHARGE of atom # 38 (H5'') from 0.0679 to 0.0822 Changing CHARGE of atom # 39 (C4') from 0.1065 to 0.2027 Changing CHARGE of atom # 40 (H4') from 0.1174 to 0.0684 Changing CHARGE of atom # 41 (O4') from -0.3548 to -0.4352 Changing CHARGE of atom # 42 (C1') from 0.0394 to 0.1194 Changing CHARGE of atom # 43 (H1') from 0.2007 to 0.1580 Changing CHARGE of atom # 44 (N9) from -0.0251 to 0.0118 Changing CHARGE of atom # 45 (C8) from 0.2006 to 0.0466 Changing CHARGE of atom # 46 (H8) from 0.1553 to 0.2502 Changing CHARGE of atom # 47 (N7) from -0.607300000549 to -0.5414 Changing CHARGE of atom # 48 (C5) from 0.0515 to 0.0046 Changing CHARGE of atom # 49 (C6) from 0.700900001646 to 0.7519 Changing CHARGE of atom # 50 (N6) from -0.901900001646 to -0.9692 Changing CHARGE of atom # 51 (H61) from 0.4115 to 0.4201 Changing CHARGE of atom # 51 (H61) from 0.4201 to 0.4201 Changing CHARGE of atom # 53 (N1) from -0.761500002744 to -0.7809 Changing CHARGE of atom # 54 (C2) from 0.587500002744 to 0.5478 Changing CHARGE of atom # 55 (H2) from 0.0473 to 0.0562 Changing CHARGE of atom # 56 (N3) from -0.699699999451 to -0.7248 Changing CHARGE of atom # 57 (C4) from 0.3053 to 0.3945 Changing CHARGE of atom # 58 (C3') from 0.2022 to 0.1298 Changing CHARGE of atom # 59 (H3') from 0.0615 to 0.0338 Changing CHARGE of atom # 60 (C2') from 0.067 to 0.1997 Changing CHARGE of atom # 61 (H2') from 0.0972 to 0.0430 Changing CHARGE of atom # 62 (O2') from -0.613900001646 to -0.6541 Changing CHARGE of atom # 63 (HO2') from 0.4186 to 0.4219 Changing CHARGE of atom # 64 (O3') from -0.654099998354 to -0.6301 Changing CHARGE of atom # 65 (HO3') from 0.4376 to 0.4225 Outputting Amber topology file full.topo.hmr Done!