[?1034h Y O U H A V E B E E N _ ==(W{==========- /===- || (.--.) /===-_---~~~~~~~~~------____ | \_,|**|,__ |===-~___ _,-' ` -==\\ `\ ' `--' ), `//~\\ ~~~~`---.___.-~~ ______-==| /`\_. .__/\ \ | | \\ _-~` __--~~~ ,-/-==\\ ( | . |~~~~| | | `\ ,' _-~ /' | \\ )__/==0==-\<>/ / / \ / .' / | \\ /~\___/~~\/ /' / \ /' / ____ / | \`\.__/-~~ \ |_/' / \/' /-'~ ~~~~~---__ | ~-/~ ( ) /' _--~` \_| / _) | ; ), __--~~ '~~--_/ _-~/- |/ \ '-~ \ {\__--_/} / \\_>-|)<__\ \ /' (_/ _-~ | |__>--<__| | | _/) )-~ | |__>--<__| | / /~ ,_/ / /__>---<__/ | o-o _// /-~_>---<__-~ / (^(~ /~_>---<__- _-~ ,/| /__>--<__/ _-~ ,//('( |__>--<__| / .----_ ( ( ')) |__>--<__| | /' _---_~\ `-)) )) ( |__>--<__| | /' / ~\`\ ,/,'//( ( \__>--<__\ \ /' // || ,( ( ((, )) ~-__>--<_~-_ ~--____---~' _/'/ /' `~/ )` ) ,/| ~-_~>--<_/-__ __-~ _/ ._-~//( )/ )) ` ~~-'_/_/ /~~~~~~~__--~ ;'( ')/ ,)( ~~~~~~~~~~ ' ') '( (/ ' ' ` P A R M E D ParmEd: a Parameter file Editor ['parmed.in'] Reading actions from parmed.in Adding prmtop tmp.topo.hmr to parm list. tmp.topo.hmr is the active parm. Changing CHARGE of atom # 2 (O5') from -0.622300000549 to -0.6006 Changing CHARGE of atom # 1 (HO5') from 0.4295 to 0.4115 Changing CHARGE of atom # 3 (C5') from 0.0558 to 0.0328 Changing CHARGE of atom # 4 (H5') from 0.0679 to 0.0641 Changing CHARGE of atom # 5 (H5'') from 0.0679 to 0.0641 Changing CHARGE of atom # 6 (C4') from 0.1065 to 0.0888 Changing CHARGE of atom # 7 (H4') from 0.1174 to 0.0700 Changing CHARGE of atom # 8 (O4') from -0.3548 to -0.3883 Changing CHARGE of atom # 9 (C1') from 0.0394 to 0.0550 Changing CHARGE of atom # 10 (H1') from 0.2007 to 0.1398 Changing CHARGE of atom # 11 (N9) from -0.0251 to -0.0089 Changing CHARGE of atom # 12 (C8) from 0.2006 to 0.1468 Changing CHARGE of atom # 13 (H8) from 0.1553 to 0.1731 Changing CHARGE of atom # 14 (N7) from -0.607300000549 to -0.5900 Changing CHARGE of atom # 15 (C5) from 0.0515 to 0.0094 Changing CHARGE of atom # 16 (C6) from 0.700900001646 to 0.7087 Changing CHARGE of atom # 17 (N6) from -0.901900001646 to -0.9426 Changing CHARGE of atom # 18 (H61) from 0.4115 to 0.4107 Changing CHARGE of atom # 19 (H62) from 0.4115 to 0.4107 Changing CHARGE of atom # 20 (N1) from -0.761500002744 to -0.7488 Changing CHARGE of atom # 21 (C2) from 0.587500002744 to 0.4926 Changing CHARGE of atom # 22 (H2) from 0.0473 to 0.0693 Changing CHARGE of atom # 23 (N3) from -0.699699999451 to -0.6632 Changing CHARGE of atom # 24 (C4) from 0.3053 to 0.3980 Changing CHARGE of atom # 25 (C3') from 0.2022 to 0.2813 Changing CHARGE of atom # 26 (H3') from 0.0615 to 0.0331 Changing CHARGE of atom # 27 (C2') from 0.067 to 0.2403 Changing CHARGE of atom # 28 (H2') from 0.0972 to 0.0115 Changing CHARGE of atom # 29 (O2') from -0.613900001646 to -0.6137 Changing CHARGE of atom # 30 (HO2') from 0.4186 to 0.3736 Changing CHARGE of atom # 31 (O3') from -0.5246 to -0.4563 Changing CHARGE of atom # 32 (P) from 1.1662000022 to 1.1888 Changing CHARGE of atom # 33 (OP1) from -0.776 to -0.7666 Changing CHARGE of atom # 34 (OP2) from -0.776 to -0.7594 Changing CHARGE of atom # 35 (O5') from -0.4989 to -0.4459 Changing CHARGE of atom # 36 (C5') from 0.0558 to 0.0304 Changing CHARGE of atom # 37 (H5') from 0.0679 to 0.0544 Changing CHARGE of atom # 38 (H5'') from 0.0679 to 0.0544 Changing CHARGE of atom # 39 (C4') from 0.1065 to 0.2280 Changing CHARGE of atom # 40 (H4') from 0.1174 to 0.0679 Changing CHARGE of atom # 41 (O4') from -0.3548 to -0.4362 Changing CHARGE of atom # 42 (C1') from 0.0394 to 0.1219 Changing CHARGE of atom # 43 (H1') from 0.2007 to 0.1529 Changing CHARGE of atom # 44 (N9) from -0.0251 to -0.0060 Changing CHARGE of atom # 45 (C8) from 0.2006 to 0.1228 Changing CHARGE of atom # 46 (H8) from 0.1553 to 0.1864 Changing CHARGE of atom # 47 (N7) from -0.607300000549 to -0.5476 Changing CHARGE of atom # 48 (C5) from 0.0515 to -0.0043 Changing CHARGE of atom # 49 (C6) from 0.700900001646 to 0.7253 Changing CHARGE of atom # 50 (N6) from -0.901900001646 to -0.9442 Changing CHARGE of atom # 51 (H61) from 0.4115 to 0.4137 Changing CHARGE of atom # 51 (H61) from 0.4137 to 0.4137 Changing CHARGE of atom # 53 (N1) from -0.761500002744 to -0.7644 Changing CHARGE of atom # 54 (C2) from 0.587500002744 to 0.5241 Changing CHARGE of atom # 55 (H2) from 0.0473 to 0.0608 Changing CHARGE of atom # 56 (N3) from -0.699699999451 to -0.6970 Changing CHARGE of atom # 57 (C4) from 0.3053 to 0.3859 Changing CHARGE of atom # 58 (C3') from 0.2022 to 0.1914 Changing CHARGE of atom # 59 (H3') from 0.0615 to 0.0179 Changing CHARGE of atom # 60 (C2') from 0.067 to 0.2444 Changing CHARGE of atom # 61 (H2') from 0.0972 to -0.0027 Changing CHARGE of atom # 62 (O2') from -0.613900001646 to -0.6775 Changing CHARGE of atom # 63 (HO2') from 0.4186 to 0.4275 Changing CHARGE of atom # 64 (O3') from -0.654099998354 to -0.6586 Changing CHARGE of atom # 65 (HO3') from 0.4376 to 0.4250 Outputting Amber topology file full.topo.hmr Done!