CPPTRAJ: Trajectory Analysis. V16.00b
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| Date/time: 06/01/16 19:05:01
| Available memory: 2.361 GB

INPUT: Reading input from 'pt-analysis1.in'
  [parm ../../../tip3p/ff12sb/run1/build/noWAt.topo.hmr]
	Reading '../../../tip3p/ff12sb/run1/build/noWAt.topo.hmr' as Amber Topology
  [trajin ../ctraj.c3]
	Reading '../ctraj.c3' as Amber NetCDF
  [reference ../../../A-form.pdb [a-form]]
	Reading '../../../A-form.pdb' as PDB
	Setting active reference for distance-based masks: 'A-form.pdb'
  [rmsd rms_2_aform :1,2&!@H= ref [a-form] mass]
    RMSD: (:1,2&!@H*), reference is "[a-form]:1" (:1,2&!@H*), mass-weighted.
	Best-fit RMSD will be calculated, coords will be rotated and translated.
  [distance dist_sugar_ox :1@O2' :2@O4']
    DISTANCE: :1@O2' to :2@O4', center of mass.
  [distance dist_N3-O5p :1@N3 :1@O5']
    DISTANCE: :1@N3 to :1@O5', center of mass.
  [distance COM :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9]
    DISTANCE: :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 to :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9, center of mass.
  [dihedral g1 :1@O5' :1@C5' :1@C4' :1@C3' type gamma]
    DIHEDRAL: [:1@O5']-[:1@C5']-[:1@C4']-[:1@C3']
              Output range is -180 to 180 degrees.
  [dihedral d1 :1@C5' :1@C4' :1@C3' :1@O3' type delta]
    DIHEDRAL: [:1@C5']-[:1@C4']-[:1@C3']-[:1@O3']
              Output range is -180 to 180 degrees.
  [dihedral e1 :1@C4' :1@C3' :1@O3' :2@P type epsilon]
    DIHEDRAL: [:1@C4']-[:1@C3']-[:1@O3']-[:2@P]
              Output range is -180 to 180 degrees.
  [dihedral z1 :1@C3' :1@O3' :2@P :2@O5' type zeta]
    DIHEDRAL: [:1@C3']-[:1@O3']-[:2@P]-[:2@O5']
              Output range is -180 to 180 degrees.
  [dihedral c1 :1@O4' :1@C1' :1@N9 :1@C4 type chin]
    DIHEDRAL: [:1@O4']-[:1@C1']-[:1@N9]-[:1@C4]
              Output range is -180 to 180 degrees.
  [dihedral a2 :1@O3' :2@P :2@O5' :2@C5' type alpha]
    DIHEDRAL: [:1@O3']-[:2@P]-[:2@O5']-[:2@C5']
              Output range is -180 to 180 degrees.
  [dihedral b2 :2@P :2@O5' :2@C5' :2@C4' type beta]
    DIHEDRAL: [:2@P]-[:2@O5']-[:2@C5']-[:2@C4']
              Output range is -180 to 180 degrees.
  [dihedral g2 :2@O5' :2@C5' :2@C4' :2@C3' type gamma]
    DIHEDRAL: [:2@O5']-[:2@C5']-[:2@C4']-[:2@C3']
              Output range is -180 to 180 degrees.
  [dihedral d2 :2@C5' :2@C4' :2@C3' :2@O3' type delta]
    DIHEDRAL: [:2@C5']-[:2@C4']-[:2@C3']-[:2@O3']
              Output range is -180 to 180 degrees.
  [dihedral c2 :2@O4' :2@C1' :2@N9 :2@C4 type chin]
    DIHEDRAL: [:2@O4']-[:2@C1']-[:2@N9]-[:2@C4]
              Output range is -180 to 180 degrees.
  [run]
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES (1 total):
 0: noWAt.topo.hmr, 65 atoms, 2 res, box: Orthogonal, 1 mol

INPUT TRAJECTORIES (1 total):
 0: 'ctraj.c3' is a NetCDF AMBER trajectory, Parm noWAt.topo.hmr (Orthogonal box) (reading 13965 of 13965)
  Coordinate processing will occur on 13965 frames.

REFERENCE FRAMES (1 total):
    0: [a-form]:1
	Active reference frame for distance-based masks is '[a-form]:1'

BEGIN TRAJECTORY PROCESSING:
.....................................................
ACTION SETUP FOR PARM 'noWAt.topo.hmr' (14 actions):
  0: [rmsd rms_2_aform :1,2&!@H= ref [a-form] mass]
	Target mask: [:1,2&!@H*](41)
	Reference mask: [:1,2&!@H*](41)
Warning: Coordinates are being rotated and box coordinates are present.
Warning: Unit cell vectors are NOT rotated; imaging will not be possible
Warning:  after the RMS-fit is performed.
  1: [distance dist_sugar_ox :1@O2' :2@O4']
	:1@O2' (1 atoms) to :2@O4' (1 atoms), imaged.
  2: [distance dist_N3-O5p :1@N3 :1@O5']
	:1@N3 (1 atoms) to :1@O5' (1 atoms), imaged.
  3: [distance COM :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9]
	:1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 (14 atoms) to :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 (14 atoms), imaged.
  4: [dihedral g1 :1@O5' :1@C5' :1@C4' :1@C3' type gamma]
	 [:1@O5'](1) [:1@C5'](1) [:1@C4'](1) [:1@C3'](1)
  5: [dihedral d1 :1@C5' :1@C4' :1@C3' :1@O3' type delta]
	 [:1@C5'](1) [:1@C4'](1) [:1@C3'](1) [:1@O3'](1)
  6: [dihedral e1 :1@C4' :1@C3' :1@O3' :2@P type epsilon]
	 [:1@C4'](1) [:1@C3'](1) [:1@O3'](1) [:2@P](1)
  7: [dihedral z1 :1@C3' :1@O3' :2@P :2@O5' type zeta]
	 [:1@C3'](1) [:1@O3'](1) [:2@P](1) [:2@O5'](1)
  8: [dihedral c1 :1@O4' :1@C1' :1@N9 :1@C4 type chin]
	 [:1@O4'](1) [:1@C1'](1) [:1@N9](1) [:1@C4](1)
  9: [dihedral a2 :1@O3' :2@P :2@O5' :2@C5' type alpha]
	 [:1@O3'](1) [:2@P](1) [:2@O5'](1) [:2@C5'](1)
  10: [dihedral b2 :2@P :2@O5' :2@C5' :2@C4' type beta]
	 [:2@P](1) [:2@O5'](1) [:2@C5'](1) [:2@C4'](1)
  11: [dihedral g2 :2@O5' :2@C5' :2@C4' :2@C3' type gamma]
	 [:2@O5'](1) [:2@C5'](1) [:2@C4'](1) [:2@C3'](1)
  12: [dihedral d2 :2@C5' :2@C4' :2@C3' :2@O3' type delta]
	 [:2@C5'](1) [:2@C4'](1) [:2@C3'](1) [:2@O3'](1)
  13: [dihedral c2 :2@O4' :2@C1' :2@N9 :2@C4 type chin]
	 [:2@O4'](1) [:2@C1'](1) [:2@N9](1) [:2@C4](1)
----- ctraj.c3 (1-13965, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 13965 frames and processed 13965 frames.
TIME: Avg. throughput= 117919.7487 frames / second.

ACTION OUTPUT:

DATASETS (14 total):
	rms_2_aform "rms_2_aform" (double, rms), size is 13965
	dist_sugar_ox "dist_sugar_ox" (double, distance), size is 13965
	dist_N3-O5p "dist_N3-O5p" (double, distance), size is 13965
	COM "COM" (double, distance), size is 13965
	g1 "g1" (double, torsion(gamma)), size is 13965
	d1 "d1" (double, torsion(delta)), size is 13965
	e1 "e1" (double, torsion(epsilon)), size is 13965
	z1 "z1" (double, torsion(zeta)), size is 13965
	c1 "c1" (double, torsion(chin)), size is 13965
	a2 "a2" (double, torsion(alpha)), size is 13965
	b2 "b2" (double, torsion(beta)), size is 13965
	g2 "g2" (double, torsion(gamma)), size is 13965
	d2 "d2" (double, torsion(delta)), size is 13965
	c2 "c2" (double, torsion(chin)), size is 13965

RUN TIMING:
TIME:		Init               : 0.0000 s (  0.04%)
TIME:		Trajectory Process : 0.1184 s ( 99.91%)
TIME:		Action Post        : 0.0000 s (  0.01%)
TIME:		Analysis           : 0.0000 s (  0.00%)
TIME:		Data File Write    : 0.0000 s (  0.03%)
TIME:		Other              : 0.0000 s (  0.00%)
TIME:	Run Total 0.1185 s
---------- RUN END ---------------------------------------------------
  [avg rms_2_aform out avg-rmsd-all.dat]
    AVERAGE: Calculating average of 1 data sets.
	Data set base name 'AVERAGE_00016'
	Output to to 'avg-rmsd-all.dat'
  [hist rms_2_aform,0,5,0.1 out rmsd-hist.dat name RMSD norm]
	Hist: rmsd-hist.dat: Set up for 1 dimensions using the following datasets:
	[ rms_2_aform ]
	norm: Sum over bins will be normalized to 1.0.
  [hist COM,0,10,0.1 out COM-hist.dat name CoM norm]
	Hist: COM-hist.dat: Set up for 1 dimensions using the following datasets:
	[ COM ]
	norm: Sum over bins will be normalized to 1.0.
  [hist dist_sugar_ox,0,10,0.1 out distO2O4-hist.dat norm]
	Hist: distO2O4-hist.dat: Set up for 1 dimensions using the following datasets:
	[ dist_sugar_ox ]
	norm: Sum over bins will be normalized to 1.0.
  [hist dist_N3-O5p,0,10,0.1 out distN3-O5p-hist.dat norm]
	Hist: distN3-O5p-hist.dat: Set up for 1 dimensions using the following datasets:
	[ dist_N3-O5p ]
	norm: Sum over bins will be normalized to 1.0.
  [hist rms_2_aform,0,5,0.1 dist_sugar_ox,0,10,0.1 out 2dhist_rms-dist.gnu norm]
	Hist: 2dhist_rms-dist.gnu: Set up for 2 dimensions using the following datasets:
	[ rms_2_aform dist_sugar_ox ]
	norm: Sum over bins will be normalized to 1.0.
  [hist g1,-180,180,1 out dihed_g1-hist.dat name gamma_1 norm]
	Hist: dihed_g1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ g1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist d1,-180,180,1 out dihed_d1-hist.dat name delta_1 norm]
	Hist: dihed_d1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ d1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist e1,-180,180,1 out dihed_e1-hist.dat name epsilon_1 norm]
	Hist: dihed_e1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ e1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist z1,-180,180,1 out dihed_z1-hist.dat name zeta_1 norm]
	Hist: dihed_z1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ z1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist c1,-180,180,1 out dihed_c1-hist.dat name chi_1 norm]
	Hist: dihed_c1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ c1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist a2,-180,180,1 out dihed_a2-hist.dat name alpha_2 norm]
	Hist: dihed_a2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ a2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist b2,-180,180,1 out dihed_b2-hist.dat name beta_2 norm]
	Hist: dihed_b2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ b2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist g2,-180,180,1 out dihed_g2-hist.dat name gamma_2 norm]
	Hist: dihed_g2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ g2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist d2,-180,180,1 out dihed_d2-hist.dat name delta_2 norm]
	Hist: dihed_d2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ d2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist c2,-180,180,1 out dihed_c2-hist.dat name chi_2 norm]
	Hist: dihed_c2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ c2 ]
	norm: Sum over bins will be normalized to 1.0.
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES (1 total):
 0: noWAt.topo.hmr, 65 atoms, 2 res, box: Orthogonal, 1 mol

INPUT TRAJECTORIES (1 total):
 0: 'ctraj.c3' is a NetCDF AMBER trajectory, Parm noWAt.topo.hmr (Orthogonal box) (reading 13965 of 13965)
  Coordinate processing will occur on 13965 frames.

REFERENCE FRAMES (1 total):
    0: [a-form]:1
	Active reference frame for distance-based masks is '[a-form]:1'

BEGIN TRAJECTORY PROCESSING:
----- ctraj.c3 (1-13965, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 13965 frames and processed 13965 frames.
TIME: Avg. throughput= 527757.8323 frames / second.

ACTION OUTPUT:

ANALYSIS: Performing 16 analyses:
  0: [avg rms_2_aform out avg-rmsd-all.dat]
	1: rms_2_aform
  1: [hist rms_2_aform,0,5,0.1 out rmsd-hist.dat name RMSD norm]
		Calculating bins from min=0 max=5 step=0.1.
	Dim rms_2_aform: 0.000000->5.000000, step 0.100000, 50 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 50
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  2: [hist COM,0,10,0.1 out COM-hist.dat name CoM norm]
		Calculating bins from min=0 max=10 step=0.1.
	Dim COM: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Warning: Frame 5 Coordinates out of bounds (-1)
	Warning: Frame 12 Coordinates out of bounds (-1)
	Warning: Frame 13 Coordinates out of bounds (-1)
	Warning: Frame 14 Coordinates out of bounds (-1)
	Warning: Frame 21 Coordinates out of bounds (-1)
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	Warning: Frame 4094 Coordinates out of bounds (-1)
	Warning: Frame 4095 Coordinates out of bounds (-1)
	Warning: Frame 4350 Coordinates out of bounds (-1)
	Warning: Frame 4354 Coordinates out of bounds (-1)
	Warning: Frame 4356 Coordinates out of bounds (-1)
	Warning: Frame 4380 Coordinates out of bounds (-1)
	Warning: Frame 4381 Coordinates out of bounds (-1)
	Warning: Frame 4382 Coordinates out of bounds (-1)
	Warning: Frame 4383 Coordinates out of bounds (-1)
	Warning: Frame 4387 Coordinates out of bounds (-1)
	Warning: Frame 4392 Coordinates out of bounds (-1)
	Warning: Frame 4394 Coordinates out of bounds (-1)
	Warning: Frame 4395 Coordinates out of bounds (-1)
	Warning: Frame 4396 Coordinates out of bounds (-1)
	Warning: Frame 4410 Coordinates out of bounds (-1)
	Warning: Frame 4411 Coordinates out of bounds (-1)
	Warning: Frame 4412 Coordinates out of bounds (-1)
	Warning: Frame 4474 Coordinates out of bounds (-1)
	Warning: Frame 4546 Coordinates out of bounds (-1)
	Warning: Frame 4585 Coordinates out of bounds (-1)
	Warning: Frame 4613 Coordinates out of bounds (-1)
	Warning: Frame 4615 Coordinates out of bounds (-1)
	Warning: Frame 4616 Coordinates out of bounds (-1)
	Warning: Frame 4638 Coordinates out of bounds (-1)
	Warning: Frame 4641 Coordinates out of bounds (-1)
	Warning: Frame 4643 Coordinates out of bounds (-1)
	Warning: Frame 4654 Coordinates out of bounds (-1)
	Warning: Frame 4680 Coordinates out of bounds (-1)
	Warning: Frame 4767 Coordinates out of bounds (-1)
	Warning: Frame 4802 Coordinates out of bounds (-1)
	Warning: Frame 4817 Coordinates out of bounds (-1)
	Warning: Frame 4859 Coordinates out of bounds (-1)
	Warning: Frame 4860 Coordinates out of bounds (-1)
	Warning: Frame 4872 Coordinates out of bounds (-1)
	Warning: Frame 4873 Coordinates out of bounds (-1)
	Warning: Frame 4904 Coordinates out of bounds (-1)
	Warning: Frame 4921 Coordinates out of bounds (-1)
	Warning: Frame 4922 Coordinates out of bounds (-1)
	Warning: Frame 4924 Coordinates out of bounds (-1)
	Warning: Frame 5081 Coordinates out of bounds (-1)
	Warning: Frame 5236 Coordinates out of bounds (-1)
	Warning: Frame 5268 Coordinates out of bounds (-1)
	Warning: Frame 5273 Coordinates out of bounds (-1)
	Warning: Frame 5274 Coordinates out of bounds (-1)
	Warning: Frame 5307 Coordinates out of bounds (-1)
	Warning: Frame 5332 Coordinates out of bounds (-1)
	Warning: Frame 5353 Coordinates out of bounds (-1)
	Warning: Frame 5354 Coordinates out of bounds (-1)
	Warning: Frame 5367 Coordinates out of bounds (-1)
	Warning: Frame 5368 Coordinates out of bounds (-1)
	Warning: Frame 5478 Coordinates out of bounds (-1)
	Warning: Frame 5486 Coordinates out of bounds (-1)
	Warning: Frame 5533 Coordinates out of bounds (-1)
	Warning: Frame 5534 Coordinates out of bounds (-1)
	Warning: Frame 5535 Coordinates out of bounds (-1)
	Warning: Frame 5563 Coordinates out of bounds (-1)
	Warning: Frame 5564 Coordinates out of bounds (-1)
	Warning: Frame 5565 Coordinates out of bounds (-1)
	Warning: Frame 5566 Coordinates out of bounds (-1)
	Warning: Frame 5712 Coordinates out of bounds (-1)
	Warning: Frame 5788 Coordinates out of bounds (-1)
	Warning: Frame 5801 Coordinates out of bounds (-1)
	Warning: Frame 5802 Coordinates out of bounds (-1)
	Warning: Frame 5912 Coordinates out of bounds (-1)
	Warning: Frame 6092 Coordinates out of bounds (-1)
	Warning: Frame 6174 Coordinates out of bounds (-1)
	Warning: Frame 6175 Coordinates out of bounds (-1)
	Warning: Frame 6176 Coordinates out of bounds (-1)
	Warning: Frame 6177 Coordinates out of bounds (-1)
	Warning: Frame 6178 Coordinates out of bounds (-1)
	Warning: Frame 6179 Coordinates out of bounds (-1)
	Warning: Frame 6207 Coordinates out of bounds (-1)
	Warning: Frame 6208 Coordinates out of bounds (-1)
	Warning: Frame 6267 Coordinates out of bounds (-1)
	Warning: Frame 6289 Coordinates out of bounds (-1)
	Warning: Frame 6330 Coordinates out of bounds (-1)
	Warning: Frame 6331 Coordinates out of bounds (-1)
	Warning: Frame 6333 Coordinates out of bounds (-1)
	Warning: Frame 6334 Coordinates out of bounds (-1)
	Warning: Frame 6395 Coordinates out of bounds (-1)
	Warning: Frame 6430 Coordinates out of bounds (-1)
	Warning: Frame 6434 Coordinates out of bounds (-1)
	Warning: Frame 6461 Coordinates out of bounds (-1)
	Warning: Frame 6464 Coordinates out of bounds (-1)
	Warning: Frame 6465 Coordinates out of bounds (-1)
	Warning: Frame 6494 Coordinates out of bounds (-1)
	Warning: Frame 6495 Coordinates out of bounds (-1)
	Warning: Frame 6514 Coordinates out of bounds (-1)
	Warning: Frame 6515 Coordinates out of bounds (-1)
	Warning: Frame 6518 Coordinates out of bounds (-1)
	Warning: Frame 6519 Coordinates out of bounds (-1)
	Warning: Frame 6520 Coordinates out of bounds (-1)
	Warning: Frame 6521 Coordinates out of bounds (-1)
	Warning: Frame 6525 Coordinates out of bounds (-1)
	Warning: Frame 6534 Coordinates out of bounds (-1)
	Warning: Frame 6535 Coordinates out of bounds (-1)
	Warning: Frame 6536 Coordinates out of bounds (-1)
	Warning: Frame 6538 Coordinates out of bounds (-1)
	Warning: Frame 6566 Coordinates out of bounds (-1)
	Warning: Frame 6568 Coordinates out of bounds (-1)
	Warning: Frame 6569 Coordinates out of bounds (-1)
	Warning: Frame 6574 Coordinates out of bounds (-1)
	Warning: Frame 6577 Coordinates out of bounds (-1)
	Warning: Frame 6592 Coordinates out of bounds (-1)
	Warning: Frame 6648 Coordinates out of bounds (-1)
	Warning: Frame 6649 Coordinates out of bounds (-1)
	Warning: Frame 6650 Coordinates out of bounds (-1)
	Warning: Frame 6659 Coordinates out of bounds (-1)
	Warning: Frame 6702 Coordinates out of bounds (-1)
	Warning: Frame 6718 Coordinates out of bounds (-1)
	Warning: Frame 6721 Coordinates out of bounds (-1)
	Warning: Frame 6723 Coordinates out of bounds (-1)
	Warning: Frame 6840 Coordinates out of bounds (-1)
	Warning: Frame 6876 Coordinates out of bounds (-1)
	Warning: Frame 6927 Coordinates out of bounds (-1)
	Warning: Frame 6928 Coordinates out of bounds (-1)
	Warning: Frame 6930 Coordinates out of bounds (-1)
	Warning: Frame 6931 Coordinates out of bounds (-1)
	Warning: Frame 6932 Coordinates out of bounds (-1)
	Warning: Frame 6933 Coordinates out of bounds (-1)
	Warning: Frame 6934 Coordinates out of bounds (-1)
	Warning: Frame 6936 Coordinates out of bounds (-1)
	Warning: Frame 6937 Coordinates out of bounds (-1)
	Warning: Frame 6938 Coordinates out of bounds (-1)
	Warning: Frame 6941 Coordinates out of bounds (-1)
	Warning: Frame 6943 Coordinates out of bounds (-1)
	Warning: Frame 6953 Coordinates out of bounds (-1)
	Warning: Frame 6954 Coordinates out of bounds (-1)
	Warning: Frame 7048 Coordinates out of bounds (-1)
	Warning: Frame 7054 Coordinates out of bounds (-1)
	Warning: Frame 7107 Coordinates out of bounds (-1)
	Warning: Frame 7112 Coordinates out of bounds (-1)
	Warning: Frame 7159 Coordinates out of bounds (-1)
	Warning: Frame 7162 Coordinates out of bounds (-1)
	Warning: Frame 7181 Coordinates out of bounds (-1)
	Warning: Frame 7186 Coordinates out of bounds (-1)
	Warning: Frame 7202 Coordinates out of bounds (-1)
	Warning: Frame 7203 Coordinates out of bounds (-1)
	Warning: Frame 7204 Coordinates out of bounds (-1)
	Warning: Frame 7205 Coordinates out of bounds (-1)
	Warning: Frame 7206 Coordinates out of bounds (-1)
	Warning: Frame 7207 Coordinates out of bounds (-1)
	Warning: Frame 7208 Coordinates out of bounds (-1)
	Warning: Frame 7209 Coordinates out of bounds (-1)
	Warning: Frame 7212 Coordinates out of bounds (-1)
	Warning: Frame 7235 Coordinates out of bounds (-1)
	Warning: Frame 7236 Coordinates out of bounds (-1)
	Warning: Frame 7237 Coordinates out of bounds (-1)
	Warning: Frame 7238 Coordinates out of bounds (-1)
	Warning: Frame 7311 Coordinates out of bounds (-1)
	Warning: Frame 7313 Coordinates out of bounds (-1)
	Warning: Frame 7314 Coordinates out of bounds (-1)
	Warning: Frame 7315 Coordinates out of bounds (-1)
	Warning: Frame 7319 Coordinates out of bounds (-1)
	Warning: Frame 7432 Coordinates out of bounds (-1)
	Warning: Frame 7435 Coordinates out of bounds (-1)
	Warning: Frame 7436 Coordinates out of bounds (-1)
	Warning: Frame 7440 Coordinates out of bounds (-1)
	Warning: Frame 7442 Coordinates out of bounds (-1)
	Warning: Frame 7444 Coordinates out of bounds (-1)
	Warning: Frame 7446 Coordinates out of bounds (-1)
	Warning: Frame 7447 Coordinates out of bounds (-1)
	Warning: Frame 7448 Coordinates out of bounds (-1)
	Warning: Frame 7450 Coordinates out of bounds (-1)
	Warning: Frame 7497 Coordinates out of bounds (-1)
	Warning: Frame 7499 Coordinates out of bounds (-1)
	Warning: Frame 7500 Coordinates out of bounds (-1)
	Warning: Frame 7511 Coordinates out of bounds (-1)
	Warning: Frame 7597 Coordinates out of bounds (-1)
	Warning: Frame 7598 Coordinates out of bounds (-1)
	Warning: Frame 7599 Coordinates out of bounds (-1)
	Warning: Frame 7600 Coordinates out of bounds (-1)
	Warning: Frame 7777 Coordinates out of bounds (-1)
	Warning: Frame 7779 Coordinates out of bounds (-1)
	Warning: Frame 7789 Coordinates out of bounds (-1)
	Warning: Frame 7791 Coordinates out of bounds (-1)
	Warning: Frame 7793 Coordinates out of bounds (-1)
	Warning: Frame 7835 Coordinates out of bounds (-1)
	Warning: Frame 7836 Coordinates out of bounds (-1)
	Warning: Frame 7854 Coordinates out of bounds (-1)
	Warning: Frame 7871 Coordinates out of bounds (-1)
	Warning: Frame 7911 Coordinates out of bounds (-1)
	Warning: Frame 7912 Coordinates out of bounds (-1)
	Warning: Frame 7925 Coordinates out of bounds (-1)
	Warning: Frame 7996 Coordinates out of bounds (-1)
	Warning: Frame 8029 Coordinates out of bounds (-1)
	Warning: Frame 8032 Coordinates out of bounds (-1)
	Warning: Frame 8073 Coordinates out of bounds (-1)
	Warning: Frame 8081 Coordinates out of bounds (-1)
	Warning: Frame 8130 Coordinates out of bounds (-1)
	Warning: Frame 8131 Coordinates out of bounds (-1)
	Warning: Frame 8132 Coordinates out of bounds (-1)
	Warning: Frame 8136 Coordinates out of bounds (-1)
	Warning: Frame 8144 Coordinates out of bounds (-1)
	Warning: Frame 8148 Coordinates out of bounds (-1)
	Warning: Frame 8149 Coordinates out of bounds (-1)
	Warning: Frame 8226 Coordinates out of bounds (-1)
	Warning: Frame 8227 Coordinates out of bounds (-1)
	Warning: Frame 8241 Coordinates out of bounds (-1)
	Warning: Frame 8266 Coordinates out of bounds (-1)
	Warning: Frame 8267 Coordinates out of bounds (-1)
	Warning: Frame 8307 Coordinates out of bounds (-1)
	Warning: Frame 8339 Coordinates out of bounds (-1)
	Warning: Frame 8344 Coordinates out of bounds (-1)
	Warning: Frame 8347 Coordinates out of bounds (-1)
	Warning: Frame 8348 Coordinates out of bounds (-1)
	Warning: Frame 8349 Coordinates out of bounds (-1)
	Warning: Frame 8350 Coordinates out of bounds (-1)
	Warning: Frame 8351 Coordinates out of bounds (-1)
	Warning: Frame 8352 Coordinates out of bounds (-1)
	Warning: Frame 8396 Coordinates out of bounds (-1)
	Warning: Frame 8397 Coordinates out of bounds (-1)
	Warning: Frame 8412 Coordinates out of bounds (-1)
	Warning: Frame 8413 Coordinates out of bounds (-1)
	Warning: Frame 8462 Coordinates out of bounds (-1)
	Warning: Frame 8502 Coordinates out of bounds (-1)
	Warning: Frame 8503 Coordinates out of bounds (-1)
	Warning: Frame 8510 Coordinates out of bounds (-1)
	Warning: Frame 8535 Coordinates out of bounds (-1)
	Warning: Frame 8537 Coordinates out of bounds (-1)
	Warning: Frame 8560 Coordinates out of bounds (-1)
	Warning: Frame 8561 Coordinates out of bounds (-1)
	Warning: Frame 8562 Coordinates out of bounds (-1)
	Warning: Frame 8563 Coordinates out of bounds (-1)
	Warning: Frame 8574 Coordinates out of bounds (-1)
	Warning: Frame 8608 Coordinates out of bounds (-1)
	Warning: Frame 8676 Coordinates out of bounds (-1)
	Warning: Frame 8680 Coordinates out of bounds (-1)
	Warning: Frame 8684 Coordinates out of bounds (-1)
	Warning: Frame 8685 Coordinates out of bounds (-1)
	Warning: Frame 8689 Coordinates out of bounds (-1)
	Warning: Frame 8695 Coordinates out of bounds (-1)
	Warning: Frame 8696 Coordinates out of bounds (-1)
	Warning: Frame 8697 Coordinates out of bounds (-1)
	Warning: Frame 8764 Coordinates out of bounds (-1)
	Warning: Frame 8780 Coordinates out of bounds (-1)
	Warning: Frame 8793 Coordinates out of bounds (-1)
	Warning: Frame 8799 Coordinates out of bounds (-1)
	Warning: Frame 8826 Coordinates out of bounds (-1)
	Warning: Frame 8855 Coordinates out of bounds (-1)
	Warning: Frame 8889 Coordinates out of bounds (-1)
	Warning: Frame 8918 Coordinates out of bounds (-1)
	Warning: Frame 8967 Coordinates out of bounds (-1)
	Warning: Frame 8969 Coordinates out of bounds (-1)
	Warning: Frame 8974 Coordinates out of bounds (-1)
	Warning: Frame 9014 Coordinates out of bounds (-1)
	Warning: Frame 9015 Coordinates out of bounds (-1)
	Warning: Frame 9060 Coordinates out of bounds (-1)
	Warning: Frame 9062 Coordinates out of bounds (-1)
	Warning: Frame 9113 Coordinates out of bounds (-1)
	Warning: Frame 9141 Coordinates out of bounds (-1)
	Warning: Frame 9174 Coordinates out of bounds (-1)
	Warning: Frame 9275 Coordinates out of bounds (-1)
	Warning: Frame 9276 Coordinates out of bounds (-1)
	Warning: Frame 9277 Coordinates out of bounds (-1)
	Warning: Frame 9302 Coordinates out of bounds (-1)
	Warning: Frame 9306 Coordinates out of bounds (-1)
	Warning: Frame 9307 Coordinates out of bounds (-1)
	Warning: Frame 9308 Coordinates out of bounds (-1)
	Warning: Frame 9350 Coordinates out of bounds (-1)
	Warning: Frame 9351 Coordinates out of bounds (-1)
	Warning: Frame 9365 Coordinates out of bounds (-1)
	Warning: Frame 9366 Coordinates out of bounds (-1)
	Warning: Frame 9389 Coordinates out of bounds (-1)
	Warning: Frame 9451 Coordinates out of bounds (-1)
	Warning: Frame 9452 Coordinates out of bounds (-1)
	Warning: Frame 9476 Coordinates out of bounds (-1)
	Warning: Frame 9498 Coordinates out of bounds (-1)
	Warning: Frame 9499 Coordinates out of bounds (-1)
	Warning: Frame 9502 Coordinates out of bounds (-1)
	Warning: Frame 9503 Coordinates out of bounds (-1)
	Warning: Frame 9509 Coordinates out of bounds (-1)
	Warning: Frame 9580 Coordinates out of bounds (-1)
	Warning: Frame 9649 Coordinates out of bounds (-1)
	Warning: Frame 9669 Coordinates out of bounds (-1)
	Warning: Frame 9756 Coordinates out of bounds (-1)
	Warning: Frame 9796 Coordinates out of bounds (-1)
	Warning: Frame 9797 Coordinates out of bounds (-1)
	Warning: Frame 9841 Coordinates out of bounds (-1)
	Warning: Frame 9842 Coordinates out of bounds (-1)
	Warning: Frame 9844 Coordinates out of bounds (-1)
	Warning: Frame 9868 Coordinates out of bounds (-1)
	Warning: Frame 9922 Coordinates out of bounds (-1)
	Warning: Frame 9936 Coordinates out of bounds (-1)
	Warning: Frame 9976 Coordinates out of bounds (-1)
	Warning: Frame 9977 Coordinates out of bounds (-1)
	Warning: Frame 9978 Coordinates out of bounds (-1)
	Warning: Frame 10054 Coordinates out of bounds (-1)
	Warning: Frame 10056 Coordinates out of bounds (-1)
	Warning: Frame 10058 Coordinates out of bounds (-1)
	Warning: Frame 10059 Coordinates out of bounds (-1)
	Warning: Frame 10087 Coordinates out of bounds (-1)
	Warning: Frame 10127 Coordinates out of bounds (-1)
	Warning: Frame 10131 Coordinates out of bounds (-1)
	Warning: Frame 10137 Coordinates out of bounds (-1)
	Warning: Frame 10198 Coordinates out of bounds (-1)
	Warning: Frame 10255 Coordinates out of bounds (-1)
	Warning: Frame 10316 Coordinates out of bounds (-1)
	Warning: Frame 10326 Coordinates out of bounds (-1)
	Warning: Frame 10392 Coordinates out of bounds (-1)
	Warning: Frame 10448 Coordinates out of bounds (-1)
	Warning: Frame 10486 Coordinates out of bounds (-1)
	Warning: Frame 10487 Coordinates out of bounds (-1)
	Warning: Frame 10490 Coordinates out of bounds (-1)
	Warning: Frame 10511 Coordinates out of bounds (-1)
	Warning: Frame 10524 Coordinates out of bounds (-1)
	Warning: Frame 10525 Coordinates out of bounds (-1)
	Warning: Frame 10528 Coordinates out of bounds (-1)
	Warning: Frame 10529 Coordinates out of bounds (-1)
	Warning: Frame 10595 Coordinates out of bounds (-1)
	Warning: Frame 10597 Coordinates out of bounds (-1)
	Warning: Frame 10829 Coordinates out of bounds (-1)
	Warning: Frame 10831 Coordinates out of bounds (-1)
	Warning: Frame 10834 Coordinates out of bounds (-1)
	Warning: Frame 10871 Coordinates out of bounds (-1)
	Warning: Frame 10888 Coordinates out of bounds (-1)
	Warning: Frame 10918 Coordinates out of bounds (-1)
	Warning: Frame 10929 Coordinates out of bounds (-1)
	Warning: Frame 10930 Coordinates out of bounds (-1)
	Warning: Frame 10946 Coordinates out of bounds (-1)
	Warning: Frame 10948 Coordinates out of bounds (-1)
	Warning: Frame 10950 Coordinates out of bounds (-1)
	Warning: Frame 10962 Coordinates out of bounds (-1)
	Warning: Frame 10995 Coordinates out of bounds (-1)
	Warning: Frame 10996 Coordinates out of bounds (-1)
	Warning: Frame 10997 Coordinates out of bounds (-1)
	Warning: Frame 11016 Coordinates out of bounds (-1)
	Warning: Frame 11019 Coordinates out of bounds (-1)
	Warning: Frame 11020 Coordinates out of bounds (-1)
	Warning: Frame 11031 Coordinates out of bounds (-1)
	Warning: Frame 11092 Coordinates out of bounds (-1)
	Warning: Frame 11109 Coordinates out of bounds (-1)
	Warning: Frame 11185 Coordinates out of bounds (-1)
	Warning: Frame 11213 Coordinates out of bounds (-1)
	Warning: Frame 11258 Coordinates out of bounds (-1)
	Warning: Frame 11271 Coordinates out of bounds (-1)
	Warning: Frame 11359 Coordinates out of bounds (-1)
	Warning: Frame 11360 Coordinates out of bounds (-1)
	Warning: Frame 11382 Coordinates out of bounds (-1)
	Warning: Frame 11386 Coordinates out of bounds (-1)
	Warning: Frame 11387 Coordinates out of bounds (-1)
	Warning: Frame 11388 Coordinates out of bounds (-1)
	Warning: Frame 11453 Coordinates out of bounds (-1)
	Warning: Frame 11454 Coordinates out of bounds (-1)
	Warning: Frame 11458 Coordinates out of bounds (-1)
	Warning: Frame 11459 Coordinates out of bounds (-1)
	Warning: Frame 11469 Coordinates out of bounds (-1)
	Warning: Frame 11503 Coordinates out of bounds (-1)
	Warning: Frame 11508 Coordinates out of bounds (-1)
	Warning: Frame 11541 Coordinates out of bounds (-1)
	Warning: Frame 11569 Coordinates out of bounds (-1)
	Warning: Frame 11615 Coordinates out of bounds (-1)
	Warning: Frame 11644 Coordinates out of bounds (-1)
	Warning: Frame 11678 Coordinates out of bounds (-1)
	Warning: Frame 11710 Coordinates out of bounds (-1)
	Warning: Frame 11712 Coordinates out of bounds (-1)
	Warning: Frame 11715 Coordinates out of bounds (-1)
	Warning: Frame 11845 Coordinates out of bounds (-1)
	Warning: Frame 11854 Coordinates out of bounds (-1)
	Warning: Frame 11855 Coordinates out of bounds (-1)
	Warning: Frame 11856 Coordinates out of bounds (-1)
	Warning: Frame 11857 Coordinates out of bounds (-1)
	Warning: Frame 11926 Coordinates out of bounds (-1)
	Warning: Frame 11947 Coordinates out of bounds (-1)
	Warning: Frame 11948 Coordinates out of bounds (-1)
	Warning: Frame 11950 Coordinates out of bounds (-1)
	Warning: Frame 11951 Coordinates out of bounds (-1)
	Warning: Frame 11957 Coordinates out of bounds (-1)
	Warning: Frame 11994 Coordinates out of bounds (-1)
	Warning: Frame 12118 Coordinates out of bounds (-1)
	Warning: Frame 12119 Coordinates out of bounds (-1)
	Warning: Frame 12139 Coordinates out of bounds (-1)
	Warning: Frame 12140 Coordinates out of bounds (-1)
	Warning: Frame 12143 Coordinates out of bounds (-1)
	Warning: Frame 12206 Coordinates out of bounds (-1)
	Warning: Frame 12207 Coordinates out of bounds (-1)
	Warning: Frame 12243 Coordinates out of bounds (-1)
	Warning: Frame 12302 Coordinates out of bounds (-1)
	Warning: Frame 12309 Coordinates out of bounds (-1)
	Warning: Frame 12310 Coordinates out of bounds (-1)
	Warning: Frame 12311 Coordinates out of bounds (-1)
	Warning: Frame 12312 Coordinates out of bounds (-1)
	Warning: Frame 12313 Coordinates out of bounds (-1)
	Warning: Frame 12322 Coordinates out of bounds (-1)
	Warning: Frame 12330 Coordinates out of bounds (-1)
	Warning: Frame 12346 Coordinates out of bounds (-1)
	Warning: Frame 12385 Coordinates out of bounds (-1)
	Warning: Frame 12461 Coordinates out of bounds (-1)
	Warning: Frame 12521 Coordinates out of bounds (-1)
	Warning: Frame 12522 Coordinates out of bounds (-1)
	Warning: Frame 12523 Coordinates out of bounds (-1)
	Warning: Frame 12580 Coordinates out of bounds (-1)
	Warning: Frame 12726 Coordinates out of bounds (-1)
	Warning: Frame 12733 Coordinates out of bounds (-1)
	Warning: Frame 12734 Coordinates out of bounds (-1)
	Warning: Frame 12799 Coordinates out of bounds (-1)
	Warning: Frame 12802 Coordinates out of bounds (-1)
	Warning: Frame 12984 Coordinates out of bounds (-1)
	Warning: Frame 12985 Coordinates out of bounds (-1)
	Warning: Frame 13016 Coordinates out of bounds (-1)
	Warning: Frame 13019 Coordinates out of bounds (-1)
	Warning: Frame 13022 Coordinates out of bounds (-1)
	Warning: Frame 13023 Coordinates out of bounds (-1)
	Warning: Frame 13024 Coordinates out of bounds (-1)
	Warning: Frame 13025 Coordinates out of bounds (-1)
	Warning: Frame 13028 Coordinates out of bounds (-1)
	Warning: Frame 13050 Coordinates out of bounds (-1)
	Warning: Frame 13051 Coordinates out of bounds (-1)
	Warning: Frame 13060 Coordinates out of bounds (-1)
	Warning: Frame 13061 Coordinates out of bounds (-1)
	Warning: Frame 13065 Coordinates out of bounds (-1)
	Warning: Frame 13099 Coordinates out of bounds (-1)
	Warning: Frame 13132 Coordinates out of bounds (-1)
	Warning: Frame 13179 Coordinates out of bounds (-1)
	Warning: Frame 13180 Coordinates out of bounds (-1)
	Warning: Frame 13181 Coordinates out of bounds (-1)
	Warning: Frame 13184 Coordinates out of bounds (-1)
	Warning: Frame 13201 Coordinates out of bounds (-1)
	Warning: Frame 13310 Coordinates out of bounds (-1)
	Warning: Frame 13316 Coordinates out of bounds (-1)
	Warning: Frame 13439 Coordinates out of bounds (-1)
	Warning: Frame 13456 Coordinates out of bounds (-1)
	Warning: Frame 13472 Coordinates out of bounds (-1)
	Warning: Frame 13473 Coordinates out of bounds (-1)
	Warning: Frame 13477 Coordinates out of bounds (-1)
	Warning: Frame 13478 Coordinates out of bounds (-1)
	Warning: Frame 13491 Coordinates out of bounds (-1)
	Warning: Frame 13599 Coordinates out of bounds (-1)
	Warning: Frame 13659 Coordinates out of bounds (-1)
	Warning: Frame 13706 Coordinates out of bounds (-1)
	Warning: Frame 13707 Coordinates out of bounds (-1)
	Warning: Frame 13792 Coordinates out of bounds (-1)
	Warning: Frame 13793 Coordinates out of bounds (-1)
	Warning: Frame 13830 Coordinates out of bounds (-1)
	Warning: Frame 13934 Coordinates out of bounds (-1)
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13338
  3: [hist dist_sugar_ox,0,10,0.1 out distO2O4-hist.dat norm]
		Calculating bins from min=0 max=10 step=0.1.
	Dim dist_sugar_ox: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  4: [hist dist_N3-O5p,0,10,0.1 out distN3-O5p-hist.dat norm]
		Calculating bins from min=0 max=10 step=0.1.
	Dim dist_N3-O5p: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  5: [hist rms_2_aform,0,5,0.1 dist_sugar_ox,0,10,0.1 out 2dhist_rms-dist.gnu norm]
		Calculating bins from min=0 max=5 step=0.1.
	Dim rms_2_aform: 0.000000->5.000000, step 0.100000, 50 bins.
		Calculating bins from min=0 max=10 step=0.1.
	Dim dist_sugar_ox: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 5000
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  6: [hist g1,-180,180,1 out dihed_g1-hist.dat name gamma_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim g1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  7: [hist d1,-180,180,1 out dihed_d1-hist.dat name delta_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim d1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  8: [hist e1,-180,180,1 out dihed_e1-hist.dat name epsilon_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim e1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  9: [hist z1,-180,180,1 out dihed_z1-hist.dat name zeta_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim z1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  10: [hist c1,-180,180,1 out dihed_c1-hist.dat name chi_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim c1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  11: [hist a2,-180,180,1 out dihed_a2-hist.dat name alpha_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim a2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  12: [hist b2,-180,180,1 out dihed_b2-hist.dat name beta_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim b2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  13: [hist g2,-180,180,1 out dihed_g2-hist.dat name gamma_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim g2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  14: [hist d2,-180,180,1 out dihed_d2-hist.dat name delta_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim d2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965
  15: [hist c2,-180,180,1 out dihed_c2-hist.dat name chi_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim c2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 13965 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 13965

TIME: Analyses took 0.0047 seconds.

DATASETS (36 total):
	rms_2_aform "rms_2_aform" (double, rms), size is 13965
	dist_sugar_ox "dist_sugar_ox" (double, distance), size is 13965
	dist_N3-O5p "dist_N3-O5p" (double, distance), size is 13965
	COM "COM" (double, distance), size is 13965
	g1 "g1" (double, torsion(gamma)), size is 13965
	d1 "d1" (double, torsion(delta)), size is 13965
	e1 "e1" (double, torsion(epsilon)), size is 13965
	z1 "z1" (double, torsion(zeta)), size is 13965
	c1 "c1" (double, torsion(chin)), size is 13965
	a2 "a2" (double, torsion(alpha)), size is 13965
	b2 "b2" (double, torsion(beta)), size is 13965
	g2 "g2" (double, torsion(gamma)), size is 13965
	d2 "d2" (double, torsion(delta)), size is 13965
	c2 "c2" (double, torsion(chin)), size is 13965
	AVERAGE_00016[avg] "AVERAGE_00016[avg]" (double), size is 1
	AVERAGE_00016[sd] "AVERAGE_00016[sd]" (double), size is 1
	AVERAGE_00016[ymin] "AVERAGE_00016[ymin]" (double), size is 1
	AVERAGE_00016[ymax] "AVERAGE_00016[ymax]" (double), size is 1
	AVERAGE_00016[yminidx] "AVERAGE_00016[yminidx]" (integer), size is 1
	AVERAGE_00016[ymaxidx] "AVERAGE_00016[ymaxidx]" (integer), size is 1
	AVERAGE_00016[names] "AVERAGE_00016[names]" (string), size is 1
	RMSD "RMSD" (double), size is 50
	CoM "CoM" (double), size is 100
	Hist_00025 "Hist_00025" (double), size is 100
	Hist_00026 "Hist_00026" (double), size is 100
	Hist_00027 "Hist_00027" (double matrix), size is 5000
	gamma_1 "gamma_1" (double), size is 360
	delta_1 "delta_1" (double), size is 360
	epsilon_1 "epsilon_1" (double), size is 360
	zeta_1 "zeta_1" (double), size is 360
	chi_1 "chi_1" (double), size is 360
	alpha_2 "alpha_2" (double), size is 360
	beta_2 "beta_2" (double), size is 360
	gamma_2 "gamma_2" (double), size is 360
	delta_2 "delta_2" (double), size is 360
	chi_2 "chi_2" (double), size is 360

DATAFILES (16 total):
  avg-rmsd-all.dat (Standard Data File):  AVERAGE_00016[avg] AVERAGE_00016[sd] AVERAGE_00016[ymin] AVERAGE_00016[ymax] AVERAGE_00016[yminidx] AVERAGE_00016[ymaxidx] AVERAGE_00016[names]
  rmsd-hist.dat (Standard Data File):  RMSD
  COM-hist.dat (Standard Data File):  CoM
  distO2O4-hist.dat (Standard Data File):  Hist_00025
  distN3-O5p-hist.dat (Standard Data File):  Hist_00026
  2dhist_rms-dist.gnu (Gnuplot File):  Hist_00027
  dihed_g1-hist.dat (Standard Data File):  gamma_1
  dihed_d1-hist.dat (Standard Data File):  delta_1
  dihed_e1-hist.dat (Standard Data File):  epsilon_1
  dihed_z1-hist.dat (Standard Data File):  zeta_1
  dihed_c1-hist.dat (Standard Data File):  chi_1
  dihed_a2-hist.dat (Standard Data File):  alpha_2
  dihed_b2-hist.dat (Standard Data File):  beta_2
  dihed_g2-hist.dat (Standard Data File):  gamma_2
  dihed_d2-hist.dat (Standard Data File):  delta_2
  dihed_c2-hist.dat (Standard Data File):  chi_2

RUN TIMING:
TIME:		Init               : 0.0000 s (  0.04%)
TIME:		Trajectory Process : 0.0265 s ( 44.33%)
TIME:		Action Post        : 0.0000 s (  0.00%)
TIME:		Analysis           : 0.0047 s (  7.84%)
TIME:		Data File Write    : 0.0285 s ( 47.74%)
TIME:		Other              : 0.0000 s (  0.00%)
TIME:	Run Total 0.0597 s
---------- RUN END ---------------------------------------------------
TIME: Total execution time: 0.1928 seconds.
--------------------------------------------------------------------------------
To cite CPPTRAJ use:
Daniel R. Roe and Thomas E. Cheatham, III, "PTRAJ and CPPTRAJ: Software for
  Processing and Analysis of Molecular Dynamics Trajectory Data". J. Chem.
  Theory Comput., 2013, 9 (7), pp 3084-3095.