CPPTRAJ: Trajectory Analysis. V15.00 OpenMP
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| Date/time: 11/18/15  11:40:04
| Available memory: 53099.3 MB

INPUT: Reading Input from file pt-analysis1.in
  [parm ../../../tip3p/ff12sb/run1/build/noWAt.topo.hmr]
	Reading '../../../tip3p/ff12sb/run1/build/noWAt.topo.hmr' as Amber Topology
  [trajin ../ctraj.c0]
	Reading '../ctraj.c0' as Amber NetCDF
  [reference ../../../A-form.pdb [a-form]]
	Reading '../../../A-form.pdb' as PDB
  [rmsd rms_2_aform :1,2&!@H= ref [a-form] mass ]
	Reference mask: [:1,2&!@H*](41)
    RMSD: (:1,2&!@H*), reference is "A-form.pdb" (:1,2&!@H*), with fitting, mass-weighted.
  [distance dist_sugar_ox :1@O2' :2@O4' ]
    DISTANCE: :1@O2' to :2@O4', center of mass.
  [distance dist_N3-O5p :1@N3 :1@O5']
    DISTANCE: :1@N3 to :1@O5', center of mass.
  [distance COM :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9]
    DISTANCE: :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 to :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9, center of mass.
  [dihedral g1 :1@O5' :1@C5' :1@C4' :1@C3' type gamma]
    DIHEDRAL: [:1@O5']-[:1@C5']-[:1@C4']-[:1@C3']
              Output range is -180 to 180 degrees.
  [dihedral d1 :1@C5' :1@C4' :1@C3' :1@O3' type delta]
    DIHEDRAL: [:1@C5']-[:1@C4']-[:1@C3']-[:1@O3']
              Output range is -180 to 180 degrees.
  [dihedral e1 :1@C4' :1@C3' :1@O3' :2@P type epsilon]
    DIHEDRAL: [:1@C4']-[:1@C3']-[:1@O3']-[:2@P]
              Output range is -180 to 180 degrees.
  [dihedral z1 :1@C3' :1@O3' :2@P :2@O5' type zeta]
    DIHEDRAL: [:1@C3']-[:1@O3']-[:2@P]-[:2@O5']
              Output range is -180 to 180 degrees.
  [dihedral c1 :1@O4' :1@C1' :1@N9 :1@C4 type chi]
    DIHEDRAL: [:1@O4']-[:1@C1']-[:1@N9]-[:1@C4]
              Output range is -180 to 180 degrees.
  [dihedral a2 :1@O3' :2@P :2@O5' :2@C5' type alpha]
    DIHEDRAL: [:1@O3']-[:2@P]-[:2@O5']-[:2@C5']
              Output range is -180 to 180 degrees.
  [dihedral b2 :2@P :2@O5' :2@C5' :2@C4' type beta]
    DIHEDRAL: [:2@P]-[:2@O5']-[:2@C5']-[:2@C4']
              Output range is -180 to 180 degrees.
  [dihedral g2 :2@O5' :2@C5' :2@C4' :2@C3' type gamma]
    DIHEDRAL: [:2@O5']-[:2@C5']-[:2@C4']-[:2@C3']
              Output range is -180 to 180 degrees.
  [dihedral d2 :2@C5' :2@C4' :2@C3' :2@O3' type delta]
    DIHEDRAL: [:2@C5']-[:2@C4']-[:2@C3']-[:2@O3']
              Output range is -180 to 180 degrees.
  [dihedral c2 :2@O4' :2@C1' :2@N9 :2@C4 type chi]
    DIHEDRAL: [:2@O4']-[:2@C1']-[:2@N9]-[:2@C4]
              Output range is -180 to 180 degrees.
  [run]
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES:
 0: 'noWAt.topo.hmr', 65 atoms, 2 res, box: Orthogonal, 1 mol, 410957 frames

INPUT TRAJECTORIES:
 0: 'ctraj.c0' is a NetCDF AMBER trajectory, Parm noWAt.topo.hmr (Orthogonal box) (reading 410957 of 410957)
  Coordinate processing will occur on 410957 frames.

REFERENCE FRAMES (1 total):
    0: '../../../A-form.pdb', frame 1
	Active reference frame for distance-based masks is 0
TIME: Run Initialization took 0.0007 seconds.

BEGIN TRAJECTORY PROCESSING:
.....................................................
ACTION SETUP FOR PARM 'noWAt.topo.hmr' (14 actions):
  0: [rmsd rms_2_aform :1,2&!@H= ref [a-form] mass ]
	Target mask: [:1,2&!@H*](41)
Warning: Coordinates are being rotated and box coordinates are present.
Warning: Unit cell vectors are NOT rotated; imaging will not be possible
Warning:  after the RMS-fit is performed.
  1: [distance dist_sugar_ox :1@O2' :2@O4' ]
	:1@O2' (1 atoms) to :2@O4' (1 atoms), imaged.
  2: [distance dist_N3-O5p :1@N3 :1@O5']
	:1@N3 (1 atoms) to :1@O5' (1 atoms), imaged.
  3: [distance COM :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9]
	:1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 (14 atoms) to :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 (14 atoms), imaged.
  4: [dihedral g1 :1@O5' :1@C5' :1@C4' :1@C3' type gamma]
	 [:1@O5'](1) [:1@C5'](1) [:1@C4'](1) [:1@C3'](1)
  5: [dihedral d1 :1@C5' :1@C4' :1@C3' :1@O3' type delta]
	 [:1@C5'](1) [:1@C4'](1) [:1@C3'](1) [:1@O3'](1)
  6: [dihedral e1 :1@C4' :1@C3' :1@O3' :2@P type epsilon]
	 [:1@C4'](1) [:1@C3'](1) [:1@O3'](1) [:2@P](1)
  7: [dihedral z1 :1@C3' :1@O3' :2@P :2@O5' type zeta]
	 [:1@C3'](1) [:1@O3'](1) [:2@P](1) [:2@O5'](1)
  8: [dihedral c1 :1@O4' :1@C1' :1@N9 :1@C4 type chi]
	 [:1@O4'](1) [:1@C1'](1) [:1@N9](1) [:1@C4](1)
  9: [dihedral a2 :1@O3' :2@P :2@O5' :2@C5' type alpha]
	 [:1@O3'](1) [:2@P](1) [:2@O5'](1) [:2@C5'](1)
  10: [dihedral b2 :2@P :2@O5' :2@C5' :2@C4' type beta]
	 [:2@P](1) [:2@O5'](1) [:2@C5'](1) [:2@C4'](1)
  11: [dihedral g2 :2@O5' :2@C5' :2@C4' :2@C3' type gamma]
	 [:2@O5'](1) [:2@C5'](1) [:2@C4'](1) [:2@C3'](1)
  12: [dihedral d2 :2@C5' :2@C4' :2@C3' :2@O3' type delta]
	 [:2@C5'](1) [:2@C4'](1) [:2@C3'](1) [:2@O3'](1)
  13: [dihedral c2 :2@O4' :2@C1' :2@N9 :2@C4 type chi]
	 [:2@O4'](1) [:2@C1'](1) [:2@N9](1) [:2@C4](1)
----- ctraj.c0 (1-410957, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 410957 frames and processed 410957 frames.
TIME: Trajectory processing: 1.5535 s
TIME: Avg. throughput= 264528.7163 frames / second.

ACTION OUTPUT:

DATASETS:
  15 data sets:
	[a-form]:1 "[a-form]:1" (reference), size is 1 '../../../A-form.pdb', refindex 0 (65 atoms)
	rms_2_aform "rms_2_aform" (double, rms), size is 410957
	dist_sugar_ox "dist_sugar_ox" (double, distance), size is 410957
	dist_N3-O5p "dist_N3-O5p" (double, distance), size is 410957
	COM "COM" (double, distance), size is 410957
	g1 "g1" (double, torsion(gamma)), size is 410957
	d1 "d1" (double, torsion(delta)), size is 410957
	e1 "e1" (double, torsion(epsilon)), size is 410957
	z1 "z1" (double, torsion(zeta)), size is 410957
	c1 "c1" (double, torsion(chi)), size is 410957
	a2 "a2" (double, torsion(alpha)), size is 410957
	b2 "b2" (double, torsion(beta)), size is 410957
	g2 "g2" (double, torsion(gamma)), size is 410957
	d2 "d2" (double, torsion(delta)), size is 410957
	c2 "c2" (double, torsion(chi)), size is 410957
---------- RUN END ---------------------------------------------------
  [avg rms_2_aform out avg-rmsd-all.dat]
    AVERAGE: Calculating average of 1 data sets.
	Writing results to avg-rmsd-all.dat
  [hist rms_2_aform,0,5,0.1 out rmsd-hist.dat name RMSD norm]
	Hist: rmsd-hist.dat: Set up for 1 dimensions using the following datasets:
	[ rms_2_aform ]
	norm: Sum over bins will be normalized to 1.0.
  [hist COM,0,10,0.1 out COM-hist.dat name CoM norm]
	Hist: COM-hist.dat: Set up for 1 dimensions using the following datasets:
	[ COM ]
	norm: Sum over bins will be normalized to 1.0.
  [hist dist_sugar_ox,0,10,0.1 out distO2O4-hist.dat norm]
	Hist: distO2O4-hist.dat: Set up for 1 dimensions using the following datasets:
	[ dist_sugar_ox ]
	norm: Sum over bins will be normalized to 1.0.
  [hist dist_N3-O5p,0,10,0.1 out distN3-O5p-hist.dat norm]
	Hist: distN3-O5p-hist.dat: Set up for 1 dimensions using the following datasets:
	[ dist_N3-O5p ]
	norm: Sum over bins will be normalized to 1.0.
  [hist rms_2_aform,0,5,0.1 dist_sugar_ox,0,10,0.1 out 2dhist_rms-dist.gnu norm]
	Hist: 2dhist_rms-dist.gnu: Set up for 2 dimensions using the following datasets:
	[ rms_2_aform dist_sugar_ox ]
	norm: Sum over bins will be normalized to 1.0.
  [hist g1,-180,180,1 out dihed_a2-hist.dat name gamma_1 norm]
	Hist: dihed_a2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ g1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist d1,-180,180,1 out dihed_d1-hist.dat name delta_1 norm]
	Hist: dihed_d1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ d1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist e1,-180,180,1 out dihed_e1-hist.dat name epsilon_1 norm]
	Hist: dihed_e1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ e1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist z1,-180,180,1 out dihed_z1-hist.dat name zeta_1 norm]
	Hist: dihed_z1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ z1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist c1,-180,180,1 out dihed_c1-hist.dat name chi_1 norm]
	Hist: dihed_c1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ c1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist a2,-180,180,1 out dihed_a2-hist.dat name alpha_2 norm]
	Hist: dihed_a2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ a2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist b2,-180,180,1 out dihed_b2-hist.dat name beta_2 norm]
	Hist: dihed_b2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ b2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist g2,-180,180,1 out dihed_g2-hist.dat name gamma_2 norm]
	Hist: dihed_g2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ g2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist d2,-180,180,1 out dihed_d2-hist.dat name delta_2 norm]
	Hist: dihed_d2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ d2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist c2,-180,180,1 out dihed_c2-hist.dat name chi_2 norm]
	Hist: dihed_c2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ c2 ]
	norm: Sum over bins will be normalized to 1.0.
---------- RUN BEGIN -------------------------------------------------
Warning: No actions/output trajectories specified.

ANALYSIS: Performing 16 analyses:
  0: [avg rms_2_aform out avg-rmsd-all.dat]
  1: [hist rms_2_aform,0,5,0.1 out rmsd-hist.dat name RMSD norm]
	Dim rms_2_aform: 0.000000->5.000000, step 0.100000, 50 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 50
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  2: [hist COM,0,10,0.1 out COM-hist.dat name CoM norm]
	Dim COM: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Warning: Frame 104 Coordinates out of bounds (-1)
	Warning: Frame 216 Coordinates out of bounds (-1)
	Warning: Frame 2757 Coordinates out of bounds (-1)
	Warning: Frame 9033 Coordinates out of bounds (-1)
	Warning: Frame 20491 Coordinates out of bounds (-1)
	Warning: Frame 21860 Coordinates out of bounds (-1)
	Warning: Frame 25159 Coordinates out of bounds (-1)
	Warning: Frame 26116 Coordinates out of bounds (-1)
	Warning: Frame 28707 Coordinates out of bounds (-1)
	Warning: Frame 28823 Coordinates out of bounds (-1)
	Warning: Frame 31661 Coordinates out of bounds (-1)
	Warning: Frame 39672 Coordinates out of bounds (-1)
	Warning: Frame 53224 Coordinates out of bounds (-1)
	Warning: Frame 53984 Coordinates out of bounds (-1)
	Warning: Frame 55921 Coordinates out of bounds (-1)
	Warning: Frame 56007 Coordinates out of bounds (-1)
	Warning: Frame 56018 Coordinates out of bounds (-1)
	Warning: Frame 62715 Coordinates out of bounds (-1)
	Warning: Frame 67581 Coordinates out of bounds (-1)
	Warning: Frame 73860 Coordinates out of bounds (-1)
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	Warning: Frame 80726 Coordinates out of bounds (-1)
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	Warning: Frame 100181 Coordinates out of bounds (-1)
	Warning: Frame 105780 Coordinates out of bounds (-1)
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	Warning: Frame 111814 Coordinates out of bounds (-1)
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	Warning: Frame 137212 Coordinates out of bounds (-1)
	Warning: Frame 151567 Coordinates out of bounds (-1)
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	Warning: Frame 200994 Coordinates out of bounds (-1)
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	Warning: Frame 203725 Coordinates out of bounds (-1)
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	Warning: Frame 204731 Coordinates out of bounds (-1)
	Warning: Frame 207513 Coordinates out of bounds (-1)
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	Warning: Frame 210466 Coordinates out of bounds (-1)
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	Warning: Frame 214352 Coordinates out of bounds (-1)
	Warning: Frame 216986 Coordinates out of bounds (-1)
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	Warning: Frame 220117 Coordinates out of bounds (-1)
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	Warning: Frame 224391 Coordinates out of bounds (-1)
	Warning: Frame 225571 Coordinates out of bounds (-1)
	Warning: Frame 226554 Coordinates out of bounds (-1)
	Warning: Frame 228549 Coordinates out of bounds (-1)
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	Warning: Frame 233705 Coordinates out of bounds (-1)
	Warning: Frame 233725 Coordinates out of bounds (-1)
	Warning: Frame 234951 Coordinates out of bounds (-1)
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	Warning: Frame 236804 Coordinates out of bounds (-1)
	Warning: Frame 236925 Coordinates out of bounds (-1)
	Warning: Frame 238273 Coordinates out of bounds (-1)
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	Warning: Frame 249893 Coordinates out of bounds (-1)
	Warning: Frame 254652 Coordinates out of bounds (-1)
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	Warning: Frame 257533 Coordinates out of bounds (-1)
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	Warning: Frame 264341 Coordinates out of bounds (-1)
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	Warning: Frame 271990 Coordinates out of bounds (-1)
	Warning: Frame 274695 Coordinates out of bounds (-1)
	Warning: Frame 279093 Coordinates out of bounds (-1)
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	Warning: Frame 289126 Coordinates out of bounds (-1)
	Warning: Frame 291757 Coordinates out of bounds (-1)
	Warning: Frame 299372 Coordinates out of bounds (-1)
	Warning: Frame 300852 Coordinates out of bounds (-1)
	Warning: Frame 325368 Coordinates out of bounds (-1)
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	Warning: Frame 363021 Coordinates out of bounds (-1)
	Warning: Frame 363023 Coordinates out of bounds (-1)
	Warning: Frame 363611 Coordinates out of bounds (-1)
	Warning: Frame 370600 Coordinates out of bounds (-1)
	Warning: Frame 397162 Coordinates out of bounds (-1)
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410818.000000
  3: [hist dist_sugar_ox,0,10,0.1 out distO2O4-hist.dat norm]
	Dim dist_sugar_ox: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  4: [hist dist_N3-O5p,0,10,0.1 out distN3-O5p-hist.dat norm]
	Dim dist_N3-O5p: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  5: [hist rms_2_aform,0,5,0.1 dist_sugar_ox,0,10,0.1 out 2dhist_rms-dist.gnu norm]
	Dim rms_2_aform: 0.000000->5.000000, step 0.100000, 50 bins.
	Dim dist_sugar_ox: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 5000
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  6: [hist g1,-180,180,1 out dihed_a2-hist.dat name gamma_1 norm]
	Dim g1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  7: [hist d1,-180,180,1 out dihed_d1-hist.dat name delta_1 norm]
	Dim d1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  8: [hist e1,-180,180,1 out dihed_e1-hist.dat name epsilon_1 norm]
	Dim e1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  9: [hist z1,-180,180,1 out dihed_z1-hist.dat name zeta_1 norm]
	Dim z1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  10: [hist c1,-180,180,1 out dihed_c1-hist.dat name chi_1 norm]
	Dim c1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  11: [hist a2,-180,180,1 out dihed_a2-hist.dat name alpha_2 norm]
	Dim a2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  12: [hist b2,-180,180,1 out dihed_b2-hist.dat name beta_2 norm]
	Dim b2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  13: [hist g2,-180,180,1 out dihed_g2-hist.dat name gamma_2 norm]
	Dim g2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  14: [hist d2,-180,180,1 out dihed_d2-hist.dat name delta_2 norm]
	Dim d2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000
  15: [hist c2,-180,180,1 out dihed_c2-hist.dat name chi_2 norm]
	Dim c2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 410957 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 410957.000000

TIME: Analyses took 0.0598 seconds.

DATASETS:
  30 data sets:
	[a-form]:1 "[a-form]:1" (reference), size is 1 '../../../A-form.pdb', refindex 0 (65 atoms)
	rms_2_aform "rms_2_aform" (double, rms), size is 410957
	dist_sugar_ox "dist_sugar_ox" (double, distance), size is 410957
	dist_N3-O5p "dist_N3-O5p" (double, distance), size is 410957
	COM "COM" (double, distance), size is 410957
	g1 "g1" (double, torsion(gamma)), size is 410957
	d1 "d1" (double, torsion(delta)), size is 410957
	e1 "e1" (double, torsion(epsilon)), size is 410957
	z1 "z1" (double, torsion(zeta)), size is 410957
	c1 "c1" (double, torsion(chi)), size is 410957
	a2 "a2" (double, torsion(alpha)), size is 410957
	b2 "b2" (double, torsion(beta)), size is 410957
	g2 "g2" (double, torsion(gamma)), size is 410957
	d2 "d2" (double, torsion(delta)), size is 410957
	c2 "c2" (double, torsion(chi)), size is 410957
	RMSD "RMSD" (double), size is 50
	CoM "CoM" (double), size is 100
	Hist_00017 "Hist_00017" (double), size is 100
	Hist_00018 "Hist_00018" (double), size is 100
	Hist_00019 "Hist_00019" (double matrix), size is 5000
	gamma_1 "gamma_1" (double), size is 360
	delta_1 "delta_1" (double), size is 360
	epsilon_1 "epsilon_1" (double), size is 360
	zeta_1 "zeta_1" (double), size is 360
	chi_1 "chi_1" (double), size is 360
	alpha_2 "alpha_2" (double), size is 360
	beta_2 "beta_2" (double), size is 360
	gamma_2 "gamma_2" (double), size is 360
	delta_2 "delta_2" (double), size is 360
	chi_2 "chi_2" (double), size is 360

DATAFILES:
  rmsd-hist.dat (Standard Data File):  RMSD
  COM-hist.dat (Standard Data File):  CoM
  distO2O4-hist.dat (Standard Data File):  Hist_00017
  distN3-O5p-hist.dat (Standard Data File):  Hist_00018
  2dhist_rms-dist.gnu (Gnuplot File):  Hist_00019
  dihed_a2-hist.dat (Standard Data File):  gamma_1 alpha_2
  dihed_d1-hist.dat (Standard Data File):  delta_1
  dihed_e1-hist.dat (Standard Data File):  epsilon_1
  dihed_z1-hist.dat (Standard Data File):  zeta_1
  dihed_c1-hist.dat (Standard Data File):  chi_1
  dihed_b2-hist.dat (Standard Data File):  beta_2
  dihed_g2-hist.dat (Standard Data File):  gamma_2
  dihed_d2-hist.dat (Standard Data File):  delta_2
  dihed_c2-hist.dat (Standard Data File):  chi_2
  avg-rmsd-all.dat (DataSet Average)
---------- RUN END ---------------------------------------------------
TIME: Total execution time: 1.9112 seconds.
--------------------------------------------------------------------------------
To cite CPPTRAJ use:
Daniel R. Roe and Thomas E. Cheatham, III, "PTRAJ and CPPTRAJ: Software for
  Processing and Analysis of Molecular Dynamics Trajectory Data". J. Chem.
  Theory Comput., 2013, 9 (7), pp 3084-3095.