[?1034h Y O U H A V E B E E N _ ==(W{==========- /===- || (.--.) /===-_---~~~~~~~~~------____ | \_,|**|,__ |===-~___ _,-' ` -==\\ `\ ' `--' ), `//~\\ ~~~~`---.___.-~~ ______-==| /`\_. .__/\ \ | | \\ _-~` __--~~~ ,-/-==\\ ( | . |~~~~| | | `\ ,' _-~ /' | \\ )__/==0==-\<>/ / / \ / .' / | \\ /~\___/~~\/ /' / \ /' / ____ / | \`\.__/-~~ \ |_/' / \/' /-'~ ~~~~~---__ | ~-/~ ( ) /' _--~` \_| / _) | ; ), __--~~ '~~--_/ _-~/- |/ \ '-~ \ {\__--_/} / \\_>-|)<__\ \ /' (_/ _-~ | |__>--<__| | | _/) )-~ | |__>--<__| | / /~ ,_/ / /__>---<__/ | o-o _// /-~_>---<__-~ / (^(~ /~_>---<__- _-~ ,/| /__>--<__/ _-~ ,//('( |__>--<__| / .----_ ( ( ')) |__>--<__| | /' _---_~\ `-)) )) ( |__>--<__| | /' / ~\`\ ,/,'//( ( \__>--<__\ \ /' // || ,( ( ((, )) ~-__>--<_~-_ ~--____---~' _/'/ /' `~/ )` ) ,/| ~-_~>--<_/-__ __-~ _/ ._-~//( )/ )) ` ~~-'_/_/ /~~~~~~~__--~ ;'( ')/ ,)( ~~~~~~~~~~ ' ') '( (/ ' ' ` P A R M E D ParmEd: a Parameter file Editor ['parmed_Ghen-Garcia.in'] Reading actions from parmed_Ghen-Garcia.in Adding prmtop full-ff99.topo to parm list. full-ff99.topo is the active parm. ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 12 C8 CK : Type index: 8 ATOM 15 C5 CB : Type index: 8 ATOM 16 C6 CA : Type index: 8 ATOM 21 C2 CQ : Type index: 8 ATOM 24 C4 CB : Type index: 8 ATOM 45 C8 CK : Type index: 8 ATOM 48 C5 CB : Type index: 8 ATOM 49 C6 CA : Type index: 8 ATOM 54 C2 CQ : Type index: 8 ATOM 57 C4 CB : Type index: 8 ATOM NUMBER NAME TYPE --------------------------------------------- ATOM NUMBER NAME TYPE --------------------------------------------- Setting LJ @%CA-@%OW pairwise interaction to have Rmin = 3.67622 and Epsilon = 0.10293 Setting LJ @%NA-@%OW pairwise interaction to have Rmin = 3.59221 and Epsilon = 0.14472 Setting LJ @%O-@%OW pairwise interaction to have Rmin = 3.42941 and Epsilon = 0.16085 Outputting Amber topology file full.topo Done!