CPPTRAJ: Trajectory Analysis. V16.00b ___ ___ ___ ___ | \/ | \/ | \/ | _|_/\_|_/\_|_/\_|_ | Date/time: 12/02/15 16:00:01 | Available memory: 1836.75 MB INPUT: Reading Input from file pt-analysis1.in [parm ../../../build/noWAt.topo.hmr] Reading '../../../build/noWAt.topo.hmr' as Amber Topology [trajin trig.nc] Reading 'trig.nc' as Amber NetCDF [reference ../../../../../../A-form.pdb [a-form]] Reading '../../../../../../A-form.pdb' as PDB Setting active reference for distance-based masks: 'A-form.pdb' [rmsd rms_2_aform :1,2&!@H= ref [a-form] mass] Reference mask: [:1,2&!@H*](41) RMSD: (:1,2&!@H*), reference is "A-form.pdb" (:1,2&!@H*), with fitting, mass-weighted. [distance dist_sugar_ox :1@O2' :2@O4'] DISTANCE: :1@O2' to :2@O4', center of mass. [distance dist_N3-O5p :1@N3 :1@O5'] DISTANCE: :1@N3 to :1@O5', center of mass. [distance COM :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9] DISTANCE: :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 to :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9, center of mass. [dihedral g1 :1@O5' :1@C5' :1@C4' :1@C3' type gamma] DIHEDRAL: [:1@O5']-[:1@C5']-[:1@C4']-[:1@C3'] Output range is -180 to 180 degrees. [dihedral d1 :1@C5' :1@C4' :1@C3' :1@O3' type delta] DIHEDRAL: [:1@C5']-[:1@C4']-[:1@C3']-[:1@O3'] Output range is -180 to 180 degrees. [dihedral e1 :1@C4' :1@C3' :1@O3' :2@P type epsilon] DIHEDRAL: [:1@C4']-[:1@C3']-[:1@O3']-[:2@P] Output range is -180 to 180 degrees. [dihedral z1 :1@C3' :1@O3' :2@P :2@O5' type zeta] DIHEDRAL: [:1@C3']-[:1@O3']-[:2@P]-[:2@O5'] Output range is -180 to 180 degrees. [dihedral c1 :1@O4' :1@C1' :1@N9 :1@C4 type chin] DIHEDRAL: [:1@O4']-[:1@C1']-[:1@N9]-[:1@C4] Output range is -180 to 180 degrees. [dihedral a2 :1@O3' :2@P :2@O5' :2@C5' type alpha] DIHEDRAL: [:1@O3']-[:2@P]-[:2@O5']-[:2@C5'] Output range is -180 to 180 degrees. [dihedral b2 :2@P :2@O5' :2@C5' :2@C4' type beta] DIHEDRAL: [:2@P]-[:2@O5']-[:2@C5']-[:2@C4'] Output range is -180 to 180 degrees. [dihedral g2 :2@O5' :2@C5' :2@C4' :2@C3' type gamma] DIHEDRAL: [:2@O5']-[:2@C5']-[:2@C4']-[:2@C3'] Output range is -180 to 180 degrees. [dihedral d2 :2@C5' :2@C4' :2@C3' :2@O3' type delta] DIHEDRAL: [:2@C5']-[:2@C4']-[:2@C3']-[:2@O3'] Output range is -180 to 180 degrees. [dihedral c2 :2@O4' :2@C1' :2@N9 :2@C4 type chin] DIHEDRAL: [:2@O4']-[:2@C1']-[:2@N9]-[:2@C4] Output range is -180 to 180 degrees. [run] ---------- RUN BEGIN ------------------------------------------------- PARAMETER FILES: 0: noWAt.topo.hmr, 65 atoms, 2 res, box: Orthogonal, 1 mol INPUT TRAJECTORIES: 0: 'trig.nc' is a NetCDF AMBER trajectory with replica temperatures, Parm noWAt.topo.hmr (Orthogonal box) (reading 15785 of 15785) Coordinate processing will occur on 15785 frames. REFERENCE FRAMES (1 total): 0: [a-form]:1 Active reference frame for distance-based masks is '[a-form]:1' TIME: Run Initialization took 0.0001 seconds. BEGIN TRAJECTORY PROCESSING: ..................................................... ACTION SETUP FOR PARM 'noWAt.topo.hmr' (14 actions): 0: [rmsd rms_2_aform :1,2&!@H= ref [a-form] mass] Target mask: [:1,2&!@H*](41) Warning: Coordinates are being rotated and box coordinates are present. Warning: Unit cell vectors are NOT rotated; imaging will not be possible Warning: after the RMS-fit is performed. 1: [distance dist_sugar_ox :1@O2' :2@O4'] :1@O2' (1 atoms) to :2@O4' (1 atoms), imaged. 2: [distance dist_N3-O5p :1@N3 :1@O5'] :1@N3 (1 atoms) to :1@O5' (1 atoms), imaged. 3: [distance COM :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9] :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 (14 atoms) to :2@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 (14 atoms), imaged. 4: [dihedral g1 :1@O5' :1@C5' :1@C4' :1@C3' type gamma] [:1@O5'](1) [:1@C5'](1) [:1@C4'](1) [:1@C3'](1) 5: [dihedral d1 :1@C5' :1@C4' :1@C3' :1@O3' type delta] [:1@C5'](1) [:1@C4'](1) [:1@C3'](1) [:1@O3'](1) 6: [dihedral e1 :1@C4' :1@C3' :1@O3' :2@P type epsilon] [:1@C4'](1) [:1@C3'](1) [:1@O3'](1) [:2@P](1) 7: [dihedral z1 :1@C3' :1@O3' :2@P :2@O5' type zeta] [:1@C3'](1) [:1@O3'](1) [:2@P](1) [:2@O5'](1) 8: [dihedral c1 :1@O4' :1@C1' :1@N9 :1@C4 type chin] [:1@O4'](1) [:1@C1'](1) [:1@N9](1) [:1@C4](1) 9: [dihedral a2 :1@O3' :2@P :2@O5' :2@C5' type alpha] [:1@O3'](1) [:2@P](1) [:2@O5'](1) [:2@C5'](1) 10: [dihedral b2 :2@P :2@O5' :2@C5' :2@C4' type beta] [:2@P](1) [:2@O5'](1) [:2@C5'](1) [:2@C4'](1) 11: [dihedral g2 :2@O5' :2@C5' :2@C4' :2@C3' type gamma] [:2@O5'](1) [:2@C5'](1) [:2@C4'](1) [:2@C3'](1) 12: [dihedral d2 :2@C5' :2@C4' :2@C3' :2@O3' type delta] [:2@C5'](1) [:2@C4'](1) [:2@C3'](1) [:2@O3'](1) 13: [dihedral c2 :2@O4' :2@C1' :2@N9 :2@C4 type chin] [:2@O4'](1) [:2@C1'](1) [:2@N9](1) [:2@C4](1) ----- trig.nc (1-15785, 1) ----- 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete. Read 15785 frames and processed 15785 frames. TIME: Trajectory processing: 0.1728 s TIME: Avg. throughput= 91340.4508 frames / second. ACTION OUTPUT: DATASETS: 16 data sets: noWAt.topo.hmr "noWAt.topo.hmr" (topology), size is 65 noWAt.topo.hmr, 65 atoms, 2 res, box: Orthogonal, 1 mol [a-form]:1 "[a-form]:1" (reference), size is 1 '../../../../../../A-form.pdb' 65 atoms rms_2_aform "rms_2_aform" (double, rms), size is 15785 dist_sugar_ox "dist_sugar_ox" (double, distance), size is 15785 dist_N3-O5p "dist_N3-O5p" (double, distance), size is 15785 COM "COM" (double, distance), size is 15785 g1 "g1" (double, torsion(gamma)), size is 15785 d1 "d1" (double, torsion(delta)), size is 15785 e1 "e1" (double, torsion(epsilon)), size is 15785 z1 "z1" (double, torsion(zeta)), size is 15785 c1 "c1" (double, torsion(chin)), size is 15785 a2 "a2" (double, torsion(alpha)), size is 15785 b2 "b2" (double, torsion(beta)), size is 15785 g2 "g2" (double, torsion(gamma)), size is 15785 d2 "d2" (double, torsion(delta)), size is 15785 c2 "c2" (double, torsion(chin)), size is 15785 ---------- RUN END --------------------------------------------------- [avg rms_2_aform out avg-rmsd-all.dat] AVERAGE: Calculating average of 1 data sets. Writing results to avg-rmsd-all.dat [hist rms_2_aform,0,5,0.1 out rmsd-hist.dat name RMSD norm] Hist: rmsd-hist.dat: Set up for 1 dimensions using the following datasets: [ rms_2_aform ] norm: Sum over bins will be normalized to 1.0. [hist COM,0,10,0.1 out COM-hist.dat name CoM norm] Hist: COM-hist.dat: Set up for 1 dimensions using the following datasets: [ COM ] norm: Sum over bins will be normalized to 1.0. [hist dist_sugar_ox,0,10,0.1 out distO2O4-hist.dat norm] Hist: distO2O4-hist.dat: Set up for 1 dimensions using the following datasets: [ dist_sugar_ox ] norm: Sum over bins will be normalized to 1.0. [hist dist_N3-O5p,0,10,0.1 out distN3-O5p-hist.dat norm] Hist: distN3-O5p-hist.dat: Set up for 1 dimensions using the following datasets: [ dist_N3-O5p ] norm: Sum over bins will be normalized to 1.0. [hist rms_2_aform,0,5,0.1 dist_sugar_ox,0,10,0.1 out 2dhist_rms-dist.gnu norm] Hist: 2dhist_rms-dist.gnu: Set up for 2 dimensions using the following datasets: [ rms_2_aform dist_sugar_ox ] norm: Sum over bins will be normalized to 1.0. [hist g1,-180,180,1 out dihed_g1-hist.dat name gamma_1 norm] Hist: dihed_g1-hist.dat: Set up for 1 dimensions using the following datasets: [ g1 ] norm: Sum over bins will be normalized to 1.0. [hist d1,-180,180,1 out dihed_d1-hist.dat name delta_1 norm] Hist: dihed_d1-hist.dat: Set up for 1 dimensions using the following datasets: [ d1 ] norm: Sum over bins will be normalized to 1.0. [hist e1,-180,180,1 out dihed_e1-hist.dat name epsilon_1 norm] Hist: dihed_e1-hist.dat: Set up for 1 dimensions using the following datasets: [ e1 ] norm: Sum over bins will be normalized to 1.0. [hist z1,-180,180,1 out dihed_z1-hist.dat name zeta_1 norm] Hist: dihed_z1-hist.dat: Set up for 1 dimensions using the following datasets: [ z1 ] norm: Sum over bins will be normalized to 1.0. [hist c1,-180,180,1 out dihed_c1-hist.dat name chi_1 norm] Hist: dihed_c1-hist.dat: Set up for 1 dimensions using the following datasets: [ c1 ] norm: Sum over bins will be normalized to 1.0. [hist a2,-180,180,1 out dihed_a2-hist.dat name alpha_2 norm] Hist: dihed_a2-hist.dat: Set up for 1 dimensions using the following datasets: [ a2 ] norm: Sum over bins will be normalized to 1.0. [hist b2,-180,180,1 out dihed_b2-hist.dat name beta_2 norm] Hist: dihed_b2-hist.dat: Set up for 1 dimensions using the following datasets: [ b2 ] norm: Sum over bins will be normalized to 1.0. [hist g2,-180,180,1 out dihed_g2-hist.dat name gamma_2 norm] Hist: dihed_g2-hist.dat: Set up for 1 dimensions using the following datasets: [ g2 ] norm: Sum over bins will be normalized to 1.0. [hist d2,-180,180,1 out dihed_d2-hist.dat name delta_2 norm] Hist: dihed_d2-hist.dat: Set up for 1 dimensions using the following datasets: [ d2 ] norm: Sum over bins will be normalized to 1.0. [hist c2,-180,180,1 out dihed_c2-hist.dat name chi_2 norm] Hist: dihed_c2-hist.dat: Set up for 1 dimensions using the following datasets: [ c2 ] norm: Sum over bins will be normalized to 1.0. ---------- RUN BEGIN ------------------------------------------------- Warning: No actions/output trajectories specified. ANALYSIS: Performing 16 analyses: 0: [avg rms_2_aform out avg-rmsd-all.dat] 1: [hist rms_2_aform,0,5,0.1 out rmsd-hist.dat name RMSD norm] Calculating bins from min=0 max=5 step=0.1. Dim rms_2_aform: 0.000000->5.000000, step 0.100000, 50 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 50 Warning: Frame 80 Coordinates out of bounds (-1) Warning: Frame 998 Coordinates out of bounds (-1) Warning: Frame 1629 Coordinates out of bounds (-1) Warning: Frame 2363 Coordinates out of bounds (-1) Warning: Frame 3132 Coordinates out of bounds (-1) Warning: Frame 3133 Coordinates out of bounds (-1) Warning: Frame 3220 Coordinates out of bounds (-1) Warning: Frame 4032 Coordinates out of bounds (-1) Warning: Frame 7742 Coordinates out of bounds (-1) Warning: Frame 7761 Coordinates out of bounds (-1) Warning: Frame 10365 Coordinates out of bounds (-1) Warning: Frame 10370 Coordinates out of bounds (-1) Warning: Frame 10384 Coordinates out of bounds (-1) Warning: Frame 13524 Coordinates out of bounds (-1) Warning: Frame 14191 Coordinates out of bounds (-1) Warning: Frame 15090 Coordinates out of bounds (-1) Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15769 2: [hist COM,0,10,0.1 out COM-hist.dat name CoM norm] Calculating bins from min=0 max=10 step=0.1. Dim COM: 0.000000->10.000000, step 0.100000, 100 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 100 Warning: Frame 10 Coordinates out of bounds (-1) Warning: Frame 18 Coordinates out of bounds (-1) Warning: Frame 29 Coordinates out of bounds (-1) Warning: Frame 31 Coordinates out of bounds (-1) Warning: Frame 49 Coordinates out of bounds (-1) Warning: Frame 58 Coordinates out of bounds (-1) Warning: Frame 60 Coordinates out of bounds (-1) Warning: Frame 61 Coordinates out of bounds (-1) Warning: Frame 80 Coordinates out of bounds (-1) Warning: Frame 81 Coordinates out of bounds (-1) Warning: Frame 82 Coordinates out of bounds (-1) Warning: Frame 112 Coordinates out of bounds (-1) Warning: Frame 113 Coordinates out of bounds (-1) Warning: Frame 152 Coordinates out of bounds (-1) Warning: Frame 156 Coordinates out of bounds (-1) Warning: Frame 278 Coordinates out of bounds (-1) Warning: Frame 301 Coordinates out of bounds (-1) Warning: Frame 304 Coordinates out of bounds (-1) Warning: Frame 310 Coordinates out of bounds (-1) Warning: Frame 311 Coordinates out of bounds (-1) Warning: Frame 317 Coordinates out of bounds (-1) Warning: Frame 318 Coordinates out of bounds (-1) Warning: Frame 319 Coordinates out of bounds (-1) Warning: Frame 323 Coordinates out of bounds (-1) Warning: Frame 324 Coordinates out of bounds (-1) Warning: Frame 325 Coordinates out of bounds (-1) Warning: Frame 328 Coordinates out of bounds (-1) Warning: Frame 329 Coordinates out of bounds (-1) Warning: Frame 342 Coordinates out of bounds (-1) Warning: Frame 344 Coordinates out of bounds (-1) Warning: Frame 348 Coordinates out of bounds (-1) Warning: Frame 349 Coordinates out of bounds (-1) Warning: Frame 397 Coordinates out of bounds (-1) Warning: Frame 431 Coordinates out of bounds (-1) Warning: Frame 439 Coordinates out of bounds (-1) Warning: Frame 441 Coordinates out of bounds (-1) Warning: Frame 466 Coordinates out of bounds (-1) Warning: Frame 469 Coordinates out of bounds (-1) Warning: Frame 470 Coordinates out of bounds (-1) Warning: Frame 471 Coordinates out of bounds (-1) Warning: Frame 473 Coordinates out of bounds (-1) Warning: Frame 474 Coordinates out of bounds (-1) Warning: Frame 482 Coordinates out of bounds (-1) Warning: Frame 554 Coordinates out of bounds (-1) Warning: Frame 555 Coordinates out of bounds (-1) Warning: Frame 562 Coordinates out of bounds (-1) Warning: Frame 563 Coordinates out of bounds (-1) Warning: Frame 565 Coordinates out of bounds (-1) Warning: Frame 567 Coordinates out of bounds (-1) Warning: Frame 591 Coordinates out of bounds (-1) Warning: Frame 592 Coordinates out of bounds (-1) Warning: Frame 633 Coordinates out of bounds (-1) Warning: Frame 679 Coordinates out of bounds (-1) Warning: Frame 698 Coordinates out of bounds (-1) Warning: Frame 701 Coordinates out of bounds (-1) Warning: Frame 719 Coordinates out of bounds (-1) Warning: Frame 744 Coordinates out of bounds (-1) Warning: Frame 792 Coordinates out of bounds (-1) Warning: Frame 793 Coordinates out of bounds (-1) Warning: Frame 798 Coordinates out of bounds (-1) Warning: Frame 998 Coordinates out of bounds (-1) Warning: Frame 1011 Coordinates out of bounds (-1) Warning: Frame 1020 Coordinates out of bounds (-1) Warning: Frame 1026 Coordinates out of bounds (-1) Warning: Frame 1029 Coordinates out of bounds (-1) Warning: Frame 1050 Coordinates out of bounds (-1) Warning: Frame 1051 Coordinates out of bounds (-1) Warning: Frame 1072 Coordinates out of bounds (-1) Warning: Frame 1078 Coordinates out of bounds (-1) Warning: Frame 1082 Coordinates out of bounds (-1) Warning: Frame 1085 Coordinates out of bounds (-1) Warning: Frame 1147 Coordinates out of bounds (-1) Warning: Frame 1157 Coordinates out of bounds (-1) Warning: Frame 1159 Coordinates out of bounds (-1) Warning: Frame 1162 Coordinates out of bounds (-1) Warning: Frame 1163 Coordinates out of bounds (-1) Warning: Frame 1164 Coordinates out of bounds (-1) Warning: Frame 1165 Coordinates out of bounds (-1) Warning: Frame 1169 Coordinates out of bounds (-1) Warning: Frame 1172 Coordinates out of bounds (-1) Warning: Frame 1173 Coordinates out of bounds (-1) Warning: Frame 1175 Coordinates out of bounds (-1) Warning: Frame 1176 Coordinates out of bounds (-1) Warning: Frame 1178 Coordinates out of bounds (-1) Warning: Frame 1181 Coordinates out of bounds (-1) Warning: Frame 1226 Coordinates out of bounds (-1) Warning: Frame 1308 Coordinates out of bounds (-1) Warning: Frame 1309 Coordinates out of bounds (-1) Warning: Frame 1310 Coordinates out of bounds (-1) Warning: Frame 1311 Coordinates out of bounds (-1) Warning: Frame 1312 Coordinates out of bounds (-1) Warning: Frame 1380 Coordinates out of bounds (-1) Warning: Frame 1396 Coordinates out of bounds (-1) Warning: Frame 1401 Coordinates out of bounds (-1) Warning: Frame 1405 Coordinates out of bounds (-1) Warning: Frame 1422 Coordinates out of bounds (-1) Warning: Frame 1426 Coordinates out of bounds (-1) Warning: Frame 1429 Coordinates out of bounds (-1) Warning: Frame 1435 Coordinates out of bounds (-1) Warning: Frame 1437 Coordinates out of bounds (-1) Warning: Frame 1494 Coordinates out of bounds (-1) Warning: Frame 1495 Coordinates out of bounds (-1) Warning: Frame 1503 Coordinates out of bounds (-1) Warning: Frame 1529 Coordinates out of bounds (-1) Warning: Frame 1530 Coordinates out of bounds (-1) Warning: Frame 1539 Coordinates out of bounds (-1) Warning: Frame 1542 Coordinates out of bounds (-1) Warning: Frame 1547 Coordinates out of bounds (-1) Warning: Frame 1560 Coordinates out of bounds (-1) Warning: Frame 1621 Coordinates out of bounds (-1) Warning: Frame 1629 Coordinates out of bounds (-1) Warning: Frame 1634 Coordinates out of bounds (-1) Warning: Frame 1655 Coordinates out of bounds (-1) Warning: Frame 1664 Coordinates out of bounds (-1) Warning: Frame 1719 Coordinates out of bounds (-1) Warning: Frame 1721 Coordinates out of bounds (-1) Warning: Frame 1723 Coordinates out of bounds (-1) Warning: Frame 1724 Coordinates out of bounds (-1) Warning: Frame 1770 Coordinates out of bounds (-1) Warning: Frame 1782 Coordinates out of bounds (-1) Warning: Frame 1859 Coordinates out of bounds (-1) Warning: Frame 1928 Coordinates out of bounds (-1) Warning: Frame 1939 Coordinates out of bounds (-1) Warning: Frame 1941 Coordinates out of bounds (-1) Warning: Frame 1953 Coordinates out of bounds (-1) Warning: Frame 2003 Coordinates out of bounds (-1) Warning: Frame 2004 Coordinates out of bounds (-1) Warning: Frame 2005 Coordinates out of bounds (-1) Warning: Frame 2008 Coordinates out of bounds (-1) Warning: Frame 2053 Coordinates out of bounds (-1) Warning: Frame 2056 Coordinates out of bounds (-1) Warning: Frame 2057 Coordinates out of bounds (-1) Warning: Frame 2059 Coordinates out of bounds (-1) Warning: Frame 2066 Coordinates out of bounds (-1) Warning: Frame 2068 Coordinates out of bounds (-1) Warning: Frame 2072 Coordinates out of bounds (-1) Warning: Frame 2077 Coordinates out of bounds (-1) Warning: Frame 2078 Coordinates out of bounds (-1) Warning: Frame 2093 Coordinates out of bounds (-1) Warning: Frame 2095 Coordinates out of bounds (-1) Warning: Frame 2139 Coordinates out of bounds (-1) Warning: Frame 2140 Coordinates out of bounds (-1) Warning: Frame 2156 Coordinates out of bounds (-1) Warning: Frame 2186 Coordinates out of bounds (-1) Warning: Frame 2189 Coordinates out of bounds (-1) Warning: Frame 2299 Coordinates out of bounds (-1) Warning: Frame 2303 Coordinates out of bounds (-1) Warning: Frame 2363 Coordinates out of bounds (-1) Warning: Frame 2365 Coordinates out of bounds (-1) Warning: Frame 2411 Coordinates out of bounds (-1) Warning: Frame 2413 Coordinates out of bounds (-1) Warning: Frame 2414 Coordinates out of bounds (-1) Warning: Frame 2415 Coordinates out of bounds (-1) Warning: Frame 2419 Coordinates out of bounds (-1) Warning: Frame 2420 Coordinates out of bounds (-1) Warning: Frame 2421 Coordinates out of bounds (-1) Warning: Frame 2461 Coordinates out of bounds (-1) Warning: Frame 2474 Coordinates out of bounds (-1) Warning: Frame 2475 Coordinates out of bounds (-1) Warning: Frame 2479 Coordinates out of bounds (-1) Warning: Frame 2480 Coordinates out of bounds (-1) Warning: Frame 2482 Coordinates out of bounds (-1) Warning: Frame 2486 Coordinates out of bounds (-1) Warning: Frame 2582 Coordinates out of bounds (-1) Warning: Frame 2583 Coordinates out of bounds (-1) Warning: Frame 2585 Coordinates out of bounds (-1) Warning: Frame 2589 Coordinates out of bounds (-1) Warning: Frame 2608 Coordinates out of bounds (-1) Warning: Frame 2621 Coordinates out of bounds (-1) Warning: Frame 2633 Coordinates out of bounds (-1) Warning: Frame 2634 Coordinates out of bounds (-1) Warning: Frame 2710 Coordinates out of bounds (-1) Warning: Frame 2713 Coordinates out of bounds (-1) Warning: Frame 2747 Coordinates out of bounds (-1) Warning: Frame 2755 Coordinates out of bounds (-1) Warning: Frame 2759 Coordinates out of bounds (-1) Warning: Frame 2761 Coordinates out of bounds (-1) Warning: Frame 2764 Coordinates out of bounds (-1) Warning: Frame 2784 Coordinates out of bounds (-1) Warning: Frame 2831 Coordinates out of bounds (-1) Warning: Frame 2955 Coordinates out of bounds (-1) Warning: Frame 3046 Coordinates out of bounds (-1) Warning: Frame 3047 Coordinates out of bounds (-1) Warning: Frame 3056 Coordinates out of bounds (-1) Warning: Frame 3057 Coordinates out of bounds (-1) Warning: Frame 3065 Coordinates out of bounds (-1) Warning: Frame 3075 Coordinates out of bounds (-1) Warning: Frame 3127 Coordinates out of bounds (-1) Warning: Frame 3130 Coordinates out of bounds (-1) Warning: Frame 3131 Coordinates out of bounds (-1) Warning: Frame 3132 Coordinates out of bounds (-1) Warning: Frame 3133 Coordinates out of bounds (-1) Warning: Frame 3134 Coordinates out of bounds (-1) Warning: Frame 3138 Coordinates out of bounds (-1) Warning: Frame 3139 Coordinates out of bounds (-1) Warning: Frame 3140 Coordinates out of bounds (-1) Warning: Frame 3146 Coordinates out of bounds (-1) Warning: Frame 3172 Coordinates out of bounds (-1) Warning: Frame 3220 Coordinates out of bounds (-1) Warning: Frame 3224 Coordinates out of bounds (-1) Warning: Frame 3225 Coordinates out of bounds (-1) Warning: Frame 3227 Coordinates out of bounds (-1) Warning: Frame 3231 Coordinates out of bounds (-1) Warning: Frame 3238 Coordinates out of bounds (-1) Warning: Frame 3241 Coordinates out of bounds (-1) Warning: Frame 3242 Coordinates out of bounds (-1) Warning: Frame 3268 Coordinates out of bounds (-1) Warning: Frame 3290 Coordinates out of bounds (-1) Warning: Frame 3292 Coordinates out of bounds (-1) Warning: Frame 3297 Coordinates out of bounds (-1) Warning: Frame 3298 Coordinates out of bounds (-1) Warning: Frame 3300 Coordinates out of bounds (-1) Warning: Frame 3319 Coordinates out of bounds (-1) Warning: Frame 3320 Coordinates out of bounds (-1) Warning: Frame 3324 Coordinates out of bounds (-1) Warning: Frame 3392 Coordinates out of bounds (-1) Warning: Frame 3394 Coordinates out of bounds (-1) Warning: Frame 3398 Coordinates out of bounds (-1) Warning: Frame 3401 Coordinates out of bounds (-1) Warning: Frame 3403 Coordinates out of bounds (-1) Warning: Frame 3404 Coordinates out of bounds (-1) Warning: Frame 3406 Coordinates out of bounds (-1) Warning: Frame 3407 Coordinates out of bounds (-1) Warning: Frame 3428 Coordinates out of bounds (-1) Warning: Frame 3520 Coordinates out of bounds (-1) Warning: Frame 3526 Coordinates out of bounds (-1) Warning: Frame 3558 Coordinates out of bounds (-1) Warning: Frame 3559 Coordinates out of bounds (-1) Warning: Frame 3731 Coordinates out of bounds (-1) Warning: Frame 3773 Coordinates out of bounds (-1) Warning: Frame 3776 Coordinates out of bounds (-1) Warning: Frame 3777 Coordinates out of bounds (-1) Warning: Frame 3779 Coordinates out of bounds (-1) Warning: Frame 3780 Coordinates out of bounds (-1) Warning: Frame 3787 Coordinates out of bounds (-1) Warning: Frame 3815 Coordinates out of bounds (-1) Warning: Frame 3819 Coordinates out of bounds (-1) Warning: Frame 3821 Coordinates out of bounds (-1) Warning: Frame 3822 Coordinates out of bounds (-1) Warning: Frame 3823 Coordinates out of bounds (-1) Warning: Frame 3824 Coordinates out of bounds (-1) Warning: Frame 3845 Coordinates out of bounds (-1) Warning: Frame 3846 Coordinates out of bounds (-1) Warning: Frame 3851 Coordinates out of bounds (-1) Warning: Frame 3865 Coordinates out of bounds (-1) Warning: Frame 4004 Coordinates out of bounds (-1) Warning: Frame 4006 Coordinates out of bounds (-1) Warning: Frame 4010 Coordinates out of bounds (-1) Warning: Frame 4015 Coordinates out of bounds (-1) Warning: Frame 4017 Coordinates out of bounds (-1) Warning: Frame 4028 Coordinates out of bounds (-1) Warning: Frame 4032 Coordinates out of bounds (-1) Warning: Frame 4035 Coordinates out of bounds (-1) Warning: Frame 4036 Coordinates out of bounds (-1) Warning: Frame 4039 Coordinates out of bounds (-1) Warning: Frame 4053 Coordinates out of bounds (-1) Warning: Frame 4059 Coordinates out of bounds (-1) Warning: Frame 4060 Coordinates out of bounds (-1) Warning: Frame 4062 Coordinates out of bounds (-1) Warning: Frame 4063 Coordinates out of bounds (-1) Warning: Frame 4064 Coordinates out of bounds (-1) Warning: Frame 4065 Coordinates out of bounds (-1) Warning: Frame 4066 Coordinates out of bounds (-1) Warning: Frame 4067 Coordinates out of bounds (-1) Warning: Frame 4103 Coordinates out of bounds (-1) Warning: Frame 4142 Coordinates out of bounds (-1) Warning: Frame 4168 Coordinates out of bounds (-1) Warning: Frame 4169 Coordinates out of bounds (-1) Warning: Frame 4174 Coordinates out of bounds (-1) Warning: Frame 4201 Coordinates out of bounds (-1) Warning: Frame 4263 Coordinates out of bounds (-1) Warning: Frame 4281 Coordinates out of bounds (-1) Warning: Frame 4286 Coordinates out of bounds (-1) Warning: Frame 4301 Coordinates out of bounds (-1) Warning: Frame 4302 Coordinates out of bounds (-1) Warning: Frame 4315 Coordinates out of bounds (-1) Warning: Frame 4386 Coordinates out of bounds (-1) Warning: Frame 4391 Coordinates out of bounds (-1) Warning: Frame 4392 Coordinates out of bounds (-1) Warning: Frame 4395 Coordinates out of bounds (-1) Warning: Frame 4396 Coordinates out of bounds (-1) Warning: Frame 4405 Coordinates out of bounds (-1) Warning: Frame 4408 Coordinates out of bounds (-1) Warning: Frame 4448 Coordinates out of bounds (-1) Warning: Frame 4449 Coordinates out of bounds (-1) Warning: Frame 4457 Coordinates out of bounds (-1) Warning: Frame 4505 Coordinates out of bounds (-1) Warning: Frame 4558 Coordinates out of bounds (-1) Warning: Frame 4559 Coordinates out of bounds (-1) Warning: Frame 4563 Coordinates out of bounds (-1) Warning: Frame 4568 Coordinates out of bounds (-1) Warning: Frame 4569 Coordinates out of bounds (-1) Warning: Frame 4570 Coordinates out of bounds (-1) Warning: Frame 4571 Coordinates out of bounds (-1) Warning: Frame 4609 Coordinates out of bounds (-1) Warning: Frame 4659 Coordinates out of bounds (-1) Warning: Frame 4690 Coordinates out of bounds (-1) Warning: Frame 4713 Coordinates out of bounds (-1) Warning: Frame 4852 Coordinates out of bounds (-1) Warning: Frame 4856 Coordinates out of bounds (-1) Warning: Frame 4857 Coordinates out of bounds (-1) Warning: Frame 4858 Coordinates out of bounds (-1) Warning: Frame 4885 Coordinates out of bounds (-1) Warning: Frame 4889 Coordinates out of bounds (-1) Warning: Frame 4899 Coordinates out of bounds (-1) Warning: Frame 4974 Coordinates out of bounds (-1) Warning: Frame 4975 Coordinates out of bounds (-1) Warning: Frame 4976 Coordinates out of bounds (-1) Warning: Frame 5012 Coordinates out of bounds (-1) Warning: Frame 5022 Coordinates out of bounds (-1) Warning: Frame 5025 Coordinates out of bounds (-1) Warning: Frame 5027 Coordinates out of bounds (-1) Warning: Frame 5081 Coordinates out of bounds (-1) Warning: Frame 5097 Coordinates out of bounds (-1) Warning: Frame 5150 Coordinates out of bounds (-1) Warning: Frame 5153 Coordinates out of bounds (-1) Warning: Frame 5184 Coordinates out of bounds (-1) Warning: Frame 5202 Coordinates out of bounds (-1) Warning: Frame 5203 Coordinates out of bounds (-1) Warning: Frame 5305 Coordinates out of bounds (-1) Warning: Frame 5339 Coordinates out of bounds (-1) Warning: Frame 5382 Coordinates out of bounds (-1) Warning: Frame 5421 Coordinates out of bounds (-1) Warning: Frame 5427 Coordinates out of bounds (-1) Warning: Frame 5475 Coordinates out of bounds (-1) Warning: Frame 5476 Coordinates out of bounds (-1) Warning: Frame 5499 Coordinates out of bounds (-1) Warning: Frame 5526 Coordinates out of bounds (-1) Warning: Frame 5529 Coordinates out of bounds (-1) Warning: Frame 5533 Coordinates out of bounds (-1) Warning: Frame 5534 Coordinates out of bounds (-1) Warning: Frame 5535 Coordinates out of bounds (-1) Warning: Frame 5561 Coordinates out of bounds (-1) Warning: Frame 5571 Coordinates out of bounds (-1) Warning: Frame 5670 Coordinates out of bounds (-1) Warning: Frame 5713 Coordinates out of bounds (-1) Warning: Frame 5718 Coordinates out of bounds (-1) Warning: Frame 5721 Coordinates out of bounds (-1) Warning: Frame 5731 Coordinates out of bounds (-1) Warning: Frame 5745 Coordinates out of bounds (-1) Warning: Frame 5855 Coordinates out of bounds (-1) Warning: Frame 5860 Coordinates out of bounds (-1) Warning: Frame 5862 Coordinates out of bounds (-1) Warning: Frame 5904 Coordinates out of bounds (-1) Warning: Frame 5931 Coordinates out of bounds (-1) Warning: Frame 5934 Coordinates out of bounds (-1) Warning: Frame 5977 Coordinates out of bounds (-1) Warning: Frame 5993 Coordinates out of bounds (-1) Warning: Frame 6016 Coordinates out of bounds (-1) Warning: Frame 6070 Coordinates out of bounds (-1) Warning: Frame 6073 Coordinates out of bounds (-1) Warning: Frame 6077 Coordinates out of bounds (-1) Warning: Frame 6078 Coordinates out of bounds (-1) Warning: 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bounds (-1) Warning: Frame 6298 Coordinates out of bounds (-1) Warning: Frame 6333 Coordinates out of bounds (-1) Warning: Frame 6336 Coordinates out of bounds (-1) Warning: Frame 6347 Coordinates out of bounds (-1) Warning: Frame 6374 Coordinates out of bounds (-1) Warning: Frame 6375 Coordinates out of bounds (-1) Warning: Frame 6376 Coordinates out of bounds (-1) Warning: Frame 6387 Coordinates out of bounds (-1) Warning: Frame 6391 Coordinates out of bounds (-1) Warning: Frame 6429 Coordinates out of bounds (-1) Warning: Frame 6432 Coordinates out of bounds (-1) Warning: Frame 6434 Coordinates out of bounds (-1) Warning: Frame 6484 Coordinates out of bounds (-1) Warning: Frame 6502 Coordinates out of bounds (-1) Warning: Frame 6663 Coordinates out of bounds (-1) Warning: Frame 6686 Coordinates out of bounds (-1) Warning: Frame 6805 Coordinates out of bounds (-1) Warning: Frame 6822 Coordinates out of bounds (-1) Warning: Frame 6859 Coordinates out of bounds (-1) Warning: Frame 6860 Coordinates out of bounds (-1) Warning: Frame 6863 Coordinates out of bounds (-1) Warning: Frame 6864 Coordinates out of bounds (-1) Warning: Frame 6871 Coordinates out of bounds (-1) Warning: Frame 6878 Coordinates out of bounds (-1) Warning: Frame 6880 Coordinates out of bounds (-1) Warning: Frame 6948 Coordinates out of bounds (-1) Warning: Frame 6949 Coordinates out of bounds (-1) Warning: Frame 6953 Coordinates out of bounds (-1) Warning: Frame 6999 Coordinates out of bounds (-1) Warning: Frame 7001 Coordinates out of bounds (-1) Warning: Frame 7016 Coordinates out of bounds (-1) Warning: Frame 7094 Coordinates out of bounds (-1) Warning: Frame 7135 Coordinates out of bounds (-1) Warning: Frame 7138 Coordinates out of bounds (-1) Warning: Frame 7139 Coordinates out of bounds (-1) Warning: Frame 7140 Coordinates out of bounds (-1) Warning: Frame 7142 Coordinates out of bounds (-1) Warning: Frame 7146 Coordinates out of bounds (-1) Warning: Frame 7213 Coordinates out of bounds (-1) Warning: Frame 7220 Coordinates out of bounds (-1) Warning: Frame 7221 Coordinates out of bounds (-1) Warning: Frame 7222 Coordinates out of bounds (-1) Warning: Frame 7223 Coordinates out of bounds (-1) Warning: Frame 7224 Coordinates out of bounds (-1) Warning: Frame 7230 Coordinates out of bounds (-1) Warning: Frame 7231 Coordinates out of bounds (-1) Warning: Frame 7237 Coordinates out of bounds (-1) Warning: Frame 7238 Coordinates out of bounds (-1) Warning: Frame 7352 Coordinates out of bounds (-1) Warning: Frame 7356 Coordinates out of bounds (-1) Warning: Frame 7357 Coordinates out of bounds (-1) Warning: Frame 7457 Coordinates out of bounds (-1) Warning: Frame 7461 Coordinates out of bounds (-1) Warning: Frame 7462 Coordinates out of bounds (-1) Warning: Frame 7479 Coordinates out of bounds (-1) Warning: Frame 7480 Coordinates out of bounds (-1) Warning: Frame 7520 Coordinates out of bounds (-1) Warning: Frame 7532 Coordinates out of bounds (-1) Warning: Frame 7536 Coordinates out of bounds (-1) Warning: Frame 7537 Coordinates out of bounds (-1) Warning: Frame 7590 Coordinates out of bounds (-1) Warning: Frame 7591 Coordinates out of bounds (-1) Warning: Frame 7646 Coordinates out of bounds (-1) Warning: Frame 7647 Coordinates out of bounds (-1) Warning: Frame 7648 Coordinates out of bounds (-1) Warning: Frame 7652 Coordinates out of bounds (-1) Warning: Frame 7653 Coordinates out of bounds (-1) Warning: Frame 7654 Coordinates out of bounds (-1) Warning: Frame 7741 Coordinates out of bounds (-1) Warning: Frame 7742 Coordinates out of bounds (-1) Warning: Frame 7744 Coordinates out of bounds (-1) Warning: Frame 7753 Coordinates out of bounds (-1) Warning: Frame 7755 Coordinates out of bounds (-1) Warning: Frame 7760 Coordinates out of bounds (-1) Warning: Frame 7761 Coordinates out of bounds (-1) Warning: Frame 7770 Coordinates out of bounds (-1) Warning: Frame 7773 Coordinates out of bounds (-1) Warning: Frame 7778 Coordinates out of bounds (-1) Warning: Frame 7779 Coordinates out of bounds (-1) Warning: Frame 7781 Coordinates out of bounds (-1) Warning: Frame 7783 Coordinates out of bounds (-1) Warning: Frame 7785 Coordinates out of bounds (-1) Warning: Frame 7786 Coordinates out of bounds (-1) Warning: Frame 7810 Coordinates out of bounds (-1) Warning: Frame 7812 Coordinates out of bounds (-1) Warning: Frame 7823 Coordinates out of bounds (-1) Warning: Frame 7891 Coordinates out of bounds (-1) Warning: Frame 7927 Coordinates out of bounds (-1) Warning: Frame 7930 Coordinates out of bounds (-1) Warning: Frame 7953 Coordinates out of bounds (-1) Warning: Frame 7956 Coordinates out of bounds (-1) Warning: Frame 7958 Coordinates out of bounds (-1) Warning: Frame 7980 Coordinates out of bounds (-1) Warning: Frame 8109 Coordinates out of bounds (-1) Warning: Frame 8111 Coordinates out of bounds (-1) Warning: Frame 8112 Coordinates out of bounds (-1) Warning: Frame 8169 Coordinates out of bounds (-1) Warning: Frame 8185 Coordinates out of bounds (-1) Warning: Frame 8186 Coordinates out of bounds (-1) Warning: Frame 8191 Coordinates out of bounds (-1) Warning: Frame 8251 Coordinates out of bounds (-1) Warning: Frame 8266 Coordinates out of bounds (-1) Warning: Frame 8332 Coordinates out of bounds (-1) Warning: Frame 8335 Coordinates out of bounds (-1) Warning: Frame 8336 Coordinates out of bounds (-1) Warning: Frame 8337 Coordinates out of bounds (-1) Warning: Frame 8338 Coordinates out of bounds (-1) Warning: Frame 8340 Coordinates out of bounds (-1) Warning: Frame 8343 Coordinates out of bounds (-1) Warning: Frame 8387 Coordinates out of bounds (-1) Warning: Frame 8388 Coordinates out of bounds (-1) Warning: Frame 8393 Coordinates out of bounds (-1) Warning: Frame 8447 Coordinates out of bounds (-1) Warning: Frame 8565 Coordinates out of bounds (-1) Warning: Frame 8592 Coordinates out of bounds (-1) Warning: Frame 8593 Coordinates out of bounds (-1) Warning: Frame 8595 Coordinates out of bounds (-1) Warning: Frame 8651 Coordinates out of bounds (-1) Warning: Frame 8654 Coordinates out of bounds (-1) Warning: Frame 8656 Coordinates out of bounds (-1) Warning: Frame 8659 Coordinates out of bounds (-1) Warning: Frame 8663 Coordinates out of bounds (-1) Warning: Frame 8670 Coordinates out of bounds (-1) Warning: Frame 8743 Coordinates out of bounds (-1) Warning: Frame 8744 Coordinates out of bounds (-1) Warning: Frame 8758 Coordinates out of bounds (-1) Warning: Frame 8763 Coordinates out of bounds (-1) Warning: Frame 8765 Coordinates out of bounds (-1) Warning: Frame 8767 Coordinates out of bounds (-1) Warning: Frame 8768 Coordinates out of bounds (-1) Warning: Frame 8769 Coordinates out of bounds (-1) Warning: Frame 8828 Coordinates out of bounds (-1) Warning: Frame 8841 Coordinates out of bounds (-1) Warning: Frame 8866 Coordinates out of bounds (-1) Warning: Frame 8892 Coordinates out of bounds (-1) Warning: Frame 8893 Coordinates out of bounds (-1) Warning: Frame 8895 Coordinates out of bounds (-1) Warning: Frame 8897 Coordinates out of bounds (-1) Warning: Frame 8899 Coordinates out of bounds (-1) Warning: Frame 8900 Coordinates out of bounds (-1) Warning: Frame 8901 Coordinates out of bounds (-1) Warning: Frame 8904 Coordinates out of bounds (-1) Warning: Frame 8905 Coordinates out of bounds (-1) Warning: Frame 8950 Coordinates out of bounds (-1) Warning: Frame 8953 Coordinates out of bounds (-1) Warning: Frame 8956 Coordinates out of bounds (-1) Warning: Frame 8957 Coordinates out of bounds (-1) Warning: Frame 8974 Coordinates out of bounds (-1) Warning: Frame 8981 Coordinates out of bounds (-1) Warning: Frame 9011 Coordinates out of bounds (-1) Warning: Frame 9013 Coordinates out of bounds (-1) Warning: Frame 9014 Coordinates out of bounds (-1) Warning: Frame 9022 Coordinates out of bounds (-1) Warning: Frame 9024 Coordinates out of bounds (-1) Warning: Frame 9026 Coordinates out of bounds (-1) Warning: Frame 9049 Coordinates out of bounds (-1) Warning: Frame 9053 Coordinates out of bounds (-1) Warning: Frame 9054 Coordinates out of bounds (-1) Warning: Frame 9074 Coordinates out of bounds (-1) Warning: Frame 9114 Coordinates out of bounds (-1) Warning: Frame 9115 Coordinates out of bounds (-1) Warning: Frame 9119 Coordinates out of bounds (-1) Warning: Frame 9146 Coordinates out of bounds (-1) Warning: Frame 9248 Coordinates out of bounds (-1) Warning: Frame 9252 Coordinates out of bounds (-1) Warning: Frame 9256 Coordinates out of bounds (-1) Warning: Frame 9257 Coordinates out of bounds (-1) Warning: Frame 9341 Coordinates out of bounds (-1) Warning: Frame 9379 Coordinates out of bounds (-1) Warning: Frame 9380 Coordinates out of bounds (-1) Warning: Frame 9381 Coordinates out of bounds (-1) Warning: Frame 9385 Coordinates out of bounds (-1) Warning: Frame 9549 Coordinates out of bounds (-1) Warning: Frame 9652 Coordinates out of bounds (-1) Warning: Frame 9754 Coordinates out of bounds (-1) Warning: Frame 9757 Coordinates out of bounds (-1) Warning: Frame 9762 Coordinates out of bounds (-1) Warning: Frame 9764 Coordinates out of bounds (-1) Warning: Frame 9765 Coordinates out of bounds (-1) Warning: Frame 9766 Coordinates out of bounds (-1) Warning: Frame 9791 Coordinates out of bounds (-1) Warning: Frame 9798 Coordinates out of bounds (-1) Warning: Frame 9817 Coordinates out of bounds (-1) Warning: Frame 9873 Coordinates out of bounds (-1) Warning: Frame 9874 Coordinates out of bounds (-1) Warning: Frame 9895 Coordinates out of bounds (-1) Warning: Frame 9926 Coordinates out of bounds (-1) Warning: Frame 9985 Coordinates out of bounds (-1) Warning: Frame 9986 Coordinates out of bounds (-1) Warning: Frame 9987 Coordinates out of bounds (-1) Warning: Frame 9988 Coordinates out of bounds (-1) Warning: Frame 9991 Coordinates out of bounds (-1) Warning: Frame 9997 Coordinates out of bounds (-1) Warning: Frame 9998 Coordinates out of bounds (-1) Warning: Frame 10008 Coordinates out of bounds (-1) Warning: Frame 10009 Coordinates out of bounds (-1) Warning: Frame 10011 Coordinates out of bounds (-1) Warning: Frame 10012 Coordinates out of bounds (-1) Warning: Frame 10013 Coordinates out of bounds (-1) Warning: Frame 10018 Coordinates out of bounds (-1) Warning: Frame 10019 Coordinates out of bounds (-1) Warning: Frame 10029 Coordinates out of bounds (-1) Warning: Frame 10037 Coordinates out of bounds (-1) Warning: Frame 10117 Coordinates out of bounds (-1) Warning: Frame 10148 Coordinates out of bounds (-1) Warning: Frame 10153 Coordinates out of bounds (-1) Warning: Frame 10175 Coordinates out of bounds (-1) Warning: Frame 10203 Coordinates out of bounds (-1) Warning: Frame 10204 Coordinates out of bounds (-1) Warning: Frame 10243 Coordinates out of bounds (-1) Warning: Frame 10362 Coordinates out of bounds (-1) Warning: Frame 10364 Coordinates out of bounds (-1) Warning: Frame 10365 Coordinates out of bounds (-1) Warning: Frame 10368 Coordinates out of bounds (-1) Warning: Frame 10370 Coordinates out of bounds (-1) Warning: Frame 10372 Coordinates out of bounds (-1) Warning: Frame 10373 Coordinates out of bounds (-1) Warning: Frame 10384 Coordinates out of bounds (-1) Warning: Frame 10385 Coordinates out of bounds (-1) Warning: Frame 10386 Coordinates out of bounds (-1) Warning: Frame 10399 Coordinates out of bounds (-1) Warning: Frame 10449 Coordinates out of bounds (-1) Warning: Frame 10476 Coordinates out of bounds (-1) Warning: Frame 10528 Coordinates out of bounds (-1) Warning: Frame 10659 Coordinates out of bounds (-1) Warning: Frame 10660 Coordinates out of bounds (-1) Warning: Frame 10663 Coordinates out of bounds (-1) Warning: Frame 10669 Coordinates out of bounds (-1) Warning: Frame 10697 Coordinates out of bounds (-1) Warning: Frame 10711 Coordinates out of bounds (-1) Warning: Frame 10737 Coordinates out of bounds (-1) Warning: Frame 10739 Coordinates out of bounds (-1) Warning: Frame 10775 Coordinates out of bounds (-1) Warning: Frame 10827 Coordinates out of bounds (-1) Warning: Frame 10832 Coordinates out of bounds (-1) Warning: Frame 10834 Coordinates out of bounds (-1) Warning: Frame 10850 Coordinates out of bounds (-1) Warning: Frame 10851 Coordinates out of bounds (-1) Warning: Frame 10855 Coordinates out of bounds (-1) Warning: Frame 10950 Coordinates out of bounds (-1) Warning: Frame 10953 Coordinates out of bounds (-1) Warning: Frame 10954 Coordinates out of bounds (-1) Warning: Frame 10969 Coordinates out of bounds (-1) Warning: Frame 11139 Coordinates out of bounds (-1) Warning: Frame 11185 Coordinates out of bounds (-1) Warning: Frame 11190 Coordinates out of bounds (-1) Warning: Frame 11192 Coordinates out of bounds (-1) Warning: Frame 11226 Coordinates out of bounds (-1) Warning: Frame 11229 Coordinates out of bounds (-1) Warning: Frame 11257 Coordinates out of bounds (-1) Warning: Frame 11336 Coordinates out of bounds (-1) Warning: Frame 11351 Coordinates out of bounds (-1) Warning: Frame 11411 Coordinates out of bounds (-1) Warning: Frame 11413 Coordinates out of bounds (-1) Warning: Frame 11428 Coordinates out of bounds (-1) Warning: Frame 11432 Coordinates out of bounds (-1) Warning: Frame 11435 Coordinates out of bounds (-1) Warning: Frame 11552 Coordinates out of bounds (-1) Warning: Frame 11573 Coordinates out of bounds (-1) Warning: Frame 11722 Coordinates out of bounds (-1) Warning: Frame 11723 Coordinates out of bounds (-1) Warning: Frame 11724 Coordinates out of bounds (-1) Warning: Frame 11727 Coordinates out of bounds (-1) Warning: Frame 11761 Coordinates out of bounds (-1) Warning: Frame 11779 Coordinates out of bounds (-1) Warning: Frame 11861 Coordinates out of bounds (-1) Warning: Frame 11862 Coordinates out of bounds (-1) Warning: Frame 11873 Coordinates out of bounds (-1) Warning: Frame 11949 Coordinates out of bounds (-1) Warning: Frame 11971 Coordinates out of bounds (-1) Warning: Frame 11972 Coordinates out of bounds (-1) Warning: Frame 11974 Coordinates out of bounds (-1) Warning: Frame 11980 Coordinates out of bounds (-1) Warning: Frame 11981 Coordinates out of bounds (-1) Warning: Frame 11983 Coordinates out of bounds (-1) Warning: Frame 11985 Coordinates out of bounds (-1) Warning: Frame 11986 Coordinates out of bounds (-1) Warning: Frame 12029 Coordinates out of bounds (-1) Warning: Frame 12031 Coordinates out of bounds (-1) Warning: Frame 12087 Coordinates out of bounds (-1) Warning: Frame 12088 Coordinates out of bounds (-1) Warning: Frame 12093 Coordinates out of bounds (-1) Warning: Frame 12099 Coordinates out of bounds (-1) Warning: Frame 12102 Coordinates out of bounds (-1) Warning: Frame 12132 Coordinates out of bounds (-1) Warning: Frame 12166 Coordinates out of bounds (-1) Warning: Frame 12172 Coordinates out of bounds (-1) Warning: Frame 12175 Coordinates out of bounds (-1) Warning: Frame 12178 Coordinates out of bounds (-1) Warning: Frame 12179 Coordinates out of bounds (-1) Warning: Frame 12180 Coordinates out of bounds (-1) Warning: Frame 12181 Coordinates out of bounds (-1) Warning: Frame 12182 Coordinates out of bounds (-1) Warning: Frame 12186 Coordinates out of bounds (-1) Warning: Frame 12187 Coordinates out of bounds (-1) Warning: Frame 12205 Coordinates out of bounds (-1) Warning: Frame 12207 Coordinates out of bounds (-1) Warning: Frame 12230 Coordinates out of bounds (-1) Warning: Frame 12291 Coordinates out of bounds (-1) Warning: Frame 12292 Coordinates out of bounds (-1) Warning: Frame 12345 Coordinates out of bounds (-1) Warning: Frame 12348 Coordinates out of bounds (-1) Warning: Frame 12351 Coordinates out of bounds (-1) Warning: Frame 12416 Coordinates out of bounds (-1) Warning: Frame 12420 Coordinates out of bounds (-1) Warning: Frame 12421 Coordinates out of bounds (-1) Warning: Frame 12422 Coordinates out of bounds (-1) Warning: Frame 12423 Coordinates out of bounds (-1) Warning: Frame 12437 Coordinates out of bounds (-1) Warning: Frame 12464 Coordinates out of bounds (-1) Warning: Frame 12476 Coordinates out of bounds (-1) Warning: Frame 12482 Coordinates out of bounds (-1) Warning: Frame 12483 Coordinates out of bounds (-1) Warning: Frame 12526 Coordinates out of bounds (-1) Warning: Frame 12530 Coordinates out of bounds (-1) Warning: Frame 12543 Coordinates out of bounds (-1) Warning: Frame 12545 Coordinates out of bounds (-1) Warning: Frame 12559 Coordinates out of bounds (-1) Warning: Frame 12615 Coordinates out of bounds (-1) Warning: Frame 12636 Coordinates out of bounds (-1) Warning: Frame 12639 Coordinates out of bounds (-1) Warning: Frame 12653 Coordinates out of bounds (-1) Warning: Frame 12667 Coordinates out of bounds (-1) Warning: Frame 12676 Coordinates out of bounds (-1) Warning: Frame 12803 Coordinates out of bounds (-1) Warning: Frame 12884 Coordinates out of bounds (-1) Warning: Frame 12937 Coordinates out of bounds (-1) Warning: Frame 12945 Coordinates out of bounds (-1) Warning: Frame 12985 Coordinates out of bounds (-1) Warning: Frame 12987 Coordinates out of bounds (-1) Warning: Frame 12988 Coordinates out of bounds (-1) Warning: Frame 12995 Coordinates out of bounds (-1) Warning: Frame 12996 Coordinates out of bounds (-1) Warning: Frame 12997 Coordinates out of bounds (-1) Warning: Frame 12998 Coordinates out of bounds (-1) Warning: Frame 13010 Coordinates out of bounds (-1) Warning: Frame 13117 Coordinates out of bounds (-1) Warning: Frame 13135 Coordinates out of bounds (-1) Warning: Frame 13157 Coordinates out of bounds (-1) Warning: Frame 13172 Coordinates out of bounds (-1) Warning: Frame 13173 Coordinates out of bounds (-1) Warning: Frame 13187 Coordinates out of bounds (-1) Warning: Frame 13190 Coordinates out of bounds (-1) Warning: Frame 13191 Coordinates out of bounds (-1) Warning: Frame 13218 Coordinates out of bounds (-1) Warning: Frame 13325 Coordinates out of bounds (-1) Warning: Frame 13361 Coordinates out of bounds (-1) Warning: Frame 13425 Coordinates out of bounds (-1) Warning: Frame 13479 Coordinates out of bounds (-1) Warning: Frame 13501 Coordinates out of bounds (-1) Warning: Frame 13502 Coordinates out of bounds (-1) Warning: Frame 13503 Coordinates out of bounds (-1) Warning: Frame 13505 Coordinates out of bounds (-1) Warning: Frame 13507 Coordinates out of bounds (-1) Warning: Frame 13509 Coordinates out of bounds (-1) Warning: Frame 13515 Coordinates out of bounds (-1) Warning: Frame 13524 Coordinates out of bounds (-1) Warning: Frame 13533 Coordinates out of bounds (-1) Warning: Frame 13534 Coordinates out of bounds (-1) Warning: Frame 13537 Coordinates out of bounds (-1) Warning: Frame 13540 Coordinates out of bounds (-1) Warning: Frame 13583 Coordinates out of bounds (-1) Warning: Frame 13585 Coordinates out of bounds (-1) Warning: Frame 13600 Coordinates out of bounds (-1) Warning: Frame 13603 Coordinates out of bounds (-1) Warning: Frame 13606 Coordinates out of bounds (-1) Warning: Frame 13628 Coordinates out of bounds (-1) Warning: Frame 13629 Coordinates out of bounds (-1) Warning: Frame 13638 Coordinates out of bounds (-1) Warning: Frame 13653 Coordinates out of bounds (-1) Warning: Frame 13654 Coordinates out of bounds (-1) Warning: Frame 13655 Coordinates out of bounds (-1) Warning: Frame 13656 Coordinates out of bounds (-1) Warning: Frame 13663 Coordinates out of bounds (-1) Warning: Frame 13664 Coordinates out of bounds (-1) Warning: Frame 13665 Coordinates out of bounds (-1) Warning: Frame 13711 Coordinates out of bounds (-1) Warning: Frame 13715 Coordinates out of bounds (-1) Warning: Frame 13716 Coordinates out of bounds (-1) Warning: Frame 13723 Coordinates out of bounds (-1) Warning: Frame 13724 Coordinates out of bounds (-1) Warning: Frame 13772 Coordinates out of bounds (-1) Warning: Frame 13774 Coordinates out of bounds (-1) Warning: Frame 13789 Coordinates out of bounds (-1) Warning: Frame 13863 Coordinates out of bounds (-1) Warning: Frame 13864 Coordinates out of bounds (-1) Warning: Frame 13873 Coordinates out of bounds (-1) Warning: Frame 13877 Coordinates out of bounds (-1) Warning: Frame 13878 Coordinates out of bounds (-1) Warning: Frame 13914 Coordinates out of bounds (-1) Warning: Frame 13915 Coordinates out of bounds (-1) Warning: Frame 13991 Coordinates out of bounds (-1) Warning: Frame 14020 Coordinates out of bounds (-1) Warning: Frame 14021 Coordinates out of bounds (-1) Warning: Frame 14023 Coordinates out of bounds (-1) Warning: Frame 14028 Coordinates out of bounds (-1) Warning: Frame 14041 Coordinates out of bounds (-1) Warning: Frame 14048 Coordinates out of bounds (-1) Warning: Frame 14068 Coordinates out of bounds (-1) Warning: Frame 14084 Coordinates out of bounds (-1) Warning: Frame 14095 Coordinates out of bounds (-1) Warning: Frame 14188 Coordinates out of bounds (-1) Warning: Frame 14191 Coordinates out of bounds (-1) Warning: Frame 14192 Coordinates out of bounds (-1) Warning: Frame 14193 Coordinates out of bounds (-1) Warning: Frame 14195 Coordinates out of bounds (-1) Warning: Frame 14196 Coordinates out of bounds (-1) Warning: Frame 14197 Coordinates out of bounds (-1) Warning: Frame 14199 Coordinates out of bounds (-1) Warning: Frame 14201 Coordinates out of bounds (-1) Warning: Frame 14202 Coordinates out of bounds (-1) Warning: Frame 14206 Coordinates out of bounds (-1) Warning: Frame 14208 Coordinates out of bounds (-1) Warning: Frame 14244 Coordinates out of bounds (-1) Warning: Frame 14289 Coordinates out of bounds (-1) Warning: Frame 14321 Coordinates out of bounds (-1) Warning: Frame 14342 Coordinates out of bounds (-1) Warning: Frame 14407 Coordinates out of bounds (-1) Warning: Frame 14415 Coordinates out of bounds (-1) Warning: Frame 14663 Coordinates out of bounds (-1) Warning: Frame 14689 Coordinates out of bounds (-1) Warning: Frame 14716 Coordinates out of bounds (-1) Warning: Frame 14735 Coordinates out of bounds (-1) Warning: Frame 14809 Coordinates out of bounds (-1) Warning: Frame 14859 Coordinates out of bounds (-1) Warning: Frame 14860 Coordinates out of bounds (-1) Warning: Frame 14893 Coordinates out of bounds (-1) Warning: Frame 14957 Coordinates out of bounds (-1) Warning: Frame 15090 Coordinates out of bounds (-1) Warning: Frame 15091 Coordinates out of bounds (-1) Warning: Frame 15114 Coordinates out of bounds (-1) Warning: Frame 15120 Coordinates out of bounds (-1) Warning: Frame 15154 Coordinates out of bounds (-1) Warning: Frame 15155 Coordinates out of bounds (-1) Warning: Frame 15175 Coordinates out of bounds (-1) Warning: Frame 15178 Coordinates out of bounds (-1) Warning: Frame 15179 Coordinates out of bounds (-1) Warning: Frame 15180 Coordinates out of bounds (-1) Warning: Frame 15181 Coordinates out of bounds (-1) Warning: Frame 15187 Coordinates out of bounds (-1) Warning: Frame 15194 Coordinates out of bounds (-1) Warning: Frame 15195 Coordinates out of bounds (-1) Warning: Frame 15197 Coordinates out of bounds (-1) Warning: Frame 15200 Coordinates out of bounds (-1) Warning: Frame 15229 Coordinates out of bounds (-1) Warning: Frame 15268 Coordinates out of bounds (-1) Warning: Frame 15271 Coordinates out of bounds (-1) Warning: Frame 15280 Coordinates out of bounds (-1) Warning: Frame 15318 Coordinates out of bounds (-1) Warning: Frame 15333 Coordinates out of bounds (-1) Warning: Frame 15354 Coordinates out of bounds (-1) Warning: Frame 15355 Coordinates out of bounds (-1) Warning: Frame 15357 Coordinates out of bounds (-1) Warning: Frame 15358 Coordinates out of bounds (-1) Warning: Frame 15360 Coordinates out of bounds (-1) Warning: Frame 15361 Coordinates out of bounds (-1) Warning: Frame 15377 Coordinates out of bounds (-1) Warning: Frame 15380 Coordinates out of bounds (-1) Warning: Frame 15382 Coordinates out of bounds (-1) Warning: Frame 15383 Coordinates out of bounds (-1) Warning: Frame 15410 Coordinates out of bounds (-1) Warning: Frame 15434 Coordinates out of bounds (-1) Warning: Frame 15478 Coordinates out of bounds (-1) Warning: Frame 15486 Coordinates out of bounds (-1) Warning: Frame 15549 Coordinates out of bounds (-1) Warning: Frame 15553 Coordinates out of bounds (-1) Warning: Frame 15554 Coordinates out of bounds (-1) Warning: Frame 15560 Coordinates out of bounds (-1) Warning: Frame 15580 Coordinates out of bounds (-1) Warning: Frame 15581 Coordinates out of bounds (-1) Warning: Frame 15582 Coordinates out of bounds (-1) Warning: Frame 15599 Coordinates out of bounds (-1) Warning: Frame 15672 Coordinates out of bounds (-1) Warning: Frame 15675 Coordinates out of bounds (-1) Warning: Frame 15682 Coordinates out of bounds (-1) Warning: Frame 15683 Coordinates out of bounds (-1) Warning: Frame 15689 Coordinates out of bounds (-1) Warning: Frame 15745 Coordinates out of bounds (-1) Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 14934 3: [hist dist_sugar_ox,0,10,0.1 out distO2O4-hist.dat norm] Calculating bins from min=0 max=10 step=0.1. Dim dist_sugar_ox: 0.000000->10.000000, step 0.100000, 100 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 100 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 4: [hist dist_N3-O5p,0,10,0.1 out distN3-O5p-hist.dat norm] Calculating bins from min=0 max=10 step=0.1. Dim dist_N3-O5p: 0.000000->10.000000, step 0.100000, 100 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 100 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 5: [hist rms_2_aform,0,5,0.1 dist_sugar_ox,0,10,0.1 out 2dhist_rms-dist.gnu norm] Calculating bins from min=0 max=5 step=0.1. Dim rms_2_aform: 0.000000->5.000000, step 0.100000, 50 bins. Calculating bins from min=0 max=10 step=0.1. Dim dist_sugar_ox: 0.000000->10.000000, step 0.100000, 100 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 5000 Warning: Frame 80 Coordinates out of bounds (-1) Warning: Frame 998 Coordinates out of bounds (-1) Warning: Frame 1629 Coordinates out of bounds (-1) Warning: Frame 2363 Coordinates out of bounds (-1) Warning: Frame 3132 Coordinates out of bounds (-1) Warning: Frame 3133 Coordinates out of bounds (-1) Warning: Frame 3220 Coordinates out of bounds (-1) Warning: Frame 4032 Coordinates out of bounds (-1) Warning: Frame 7742 Coordinates out of bounds (-1) Warning: Frame 7761 Coordinates out of bounds (-1) Warning: Frame 10365 Coordinates out of bounds (-1) Warning: Frame 10370 Coordinates out of bounds (-1) Warning: Frame 10384 Coordinates out of bounds (-1) Warning: Frame 13524 Coordinates out of bounds (-1) Warning: Frame 14191 Coordinates out of bounds (-1) Warning: Frame 15090 Coordinates out of bounds (-1) Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15769 6: [hist g1,-180,180,1 out dihed_g1-hist.dat name gamma_1 norm] Calculating bins from min=-180 max=180 step=1. Dim g1: -180.000000->180.000000, step 1.000000, 360 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 360 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 7: [hist d1,-180,180,1 out dihed_d1-hist.dat name delta_1 norm] Calculating bins from min=-180 max=180 step=1. Dim d1: -180.000000->180.000000, step 1.000000, 360 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 360 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 8: [hist e1,-180,180,1 out dihed_e1-hist.dat name epsilon_1 norm] Calculating bins from min=-180 max=180 step=1. Dim e1: -180.000000->180.000000, step 1.000000, 360 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 360 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 9: [hist z1,-180,180,1 out dihed_z1-hist.dat name zeta_1 norm] Calculating bins from min=-180 max=180 step=1. Dim z1: -180.000000->180.000000, step 1.000000, 360 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 360 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 10: [hist c1,-180,180,1 out dihed_c1-hist.dat name chi_1 norm] Calculating bins from min=-180 max=180 step=1. Dim c1: -180.000000->180.000000, step 1.000000, 360 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 360 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 11: [hist a2,-180,180,1 out dihed_a2-hist.dat name alpha_2 norm] Calculating bins from min=-180 max=180 step=1. Dim a2: -180.000000->180.000000, step 1.000000, 360 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 360 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 12: [hist b2,-180,180,1 out dihed_b2-hist.dat name beta_2 norm] Calculating bins from min=-180 max=180 step=1. Dim b2: -180.000000->180.000000, step 1.000000, 360 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 360 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 13: [hist g2,-180,180,1 out dihed_g2-hist.dat name gamma_2 norm] Calculating bins from min=-180 max=180 step=1. Dim g2: -180.000000->180.000000, step 1.000000, 360 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 360 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 14: [hist d2,-180,180,1 out dihed_d2-hist.dat name delta_2 norm] Calculating bins from min=-180 max=180 step=1. Dim d2: -180.000000->180.000000, step 1.000000, 360 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 360 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 15: [hist c2,-180,180,1 out dihed_c2-hist.dat name chi_2 norm] Calculating bins from min=-180 max=180 step=1. Dim c2: -180.000000->180.000000, step 1.000000, 360 bins. Hist: 15785 data points in each dimension. Hist: Allocating histogram, total bins = 360 Histogram: Normalizing sum of bin populations to 1.0 Sum over all bins is 15785 TIME: Analyses took 0.0066 seconds. DATASETS: 31 data sets: noWAt.topo.hmr "noWAt.topo.hmr" (topology), size is 65 noWAt.topo.hmr, 65 atoms, 2 res, box: Orthogonal, 1 mol [a-form]:1 "[a-form]:1" (reference), size is 1 '../../../../../../A-form.pdb' 65 atoms rms_2_aform "rms_2_aform" (double, rms), size is 15785 dist_sugar_ox "dist_sugar_ox" (double, distance), size is 15785 dist_N3-O5p "dist_N3-O5p" (double, distance), size is 15785 COM "COM" (double, distance), size is 15785 g1 "g1" (double, torsion(gamma)), size is 15785 d1 "d1" (double, torsion(delta)), size is 15785 e1 "e1" (double, torsion(epsilon)), size is 15785 z1 "z1" (double, torsion(zeta)), size is 15785 c1 "c1" (double, torsion(chin)), size is 15785 a2 "a2" (double, torsion(alpha)), size is 15785 b2 "b2" (double, torsion(beta)), size is 15785 g2 "g2" (double, torsion(gamma)), size is 15785 d2 "d2" (double, torsion(delta)), size is 15785 c2 "c2" (double, torsion(chin)), size is 15785 RMSD "RMSD" (double), size is 50 CoM "CoM" (double), size is 100 Hist_00018 "Hist_00018" (double), size is 100 Hist_00019 "Hist_00019" (double), size is 100 Hist_00020 "Hist_00020" (double matrix), size is 5000 gamma_1 "gamma_1" (double), size is 360 delta_1 "delta_1" (double), size is 360 epsilon_1 "epsilon_1" (double), size is 360 zeta_1 "zeta_1" (double), size is 360 chi_1 "chi_1" (double), size is 360 alpha_2 "alpha_2" (double), size is 360 beta_2 "beta_2" (double), size is 360 gamma_2 "gamma_2" (double), size is 360 delta_2 "delta_2" (double), size is 360 chi_2 "chi_2" (double), size is 360 DATAFILES: rmsd-hist.dat (Standard Data File): RMSD COM-hist.dat (Standard Data File): CoM distO2O4-hist.dat (Standard Data File): Hist_00018 distN3-O5p-hist.dat (Standard Data File): Hist_00019 2dhist_rms-dist.gnu (Gnuplot File): Hist_00020 dihed_g1-hist.dat (Standard Data File): gamma_1 dihed_d1-hist.dat (Standard Data File): delta_1 dihed_e1-hist.dat (Standard Data File): epsilon_1 dihed_z1-hist.dat (Standard Data File): zeta_1 dihed_c1-hist.dat (Standard Data File): chi_1 dihed_a2-hist.dat (Standard Data File): alpha_2 dihed_b2-hist.dat (Standard Data File): beta_2 dihed_g2-hist.dat (Standard Data File): gamma_2 dihed_d2-hist.dat (Standard Data File): delta_2 dihed_c2-hist.dat (Standard Data File): chi_2 avg-rmsd-all.dat (DataSet Average) ---------- RUN END --------------------------------------------------- TIME: Total execution time: 0.2379 seconds. -------------------------------------------------------------------------------- To cite CPPTRAJ use: Daniel R. Roe and Thomas E. Cheatham, III, "PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data". J. Chem. Theory Comput., 2013, 9 (7), pp 3084-3095.