CPPTRAJ: Trajectory Analysis. V16.00b
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| Date/time: 05/26/16 11:28:13
| Available memory: 1.755 GB

INPUT: Reading input from 'pt-analysis1.in'
  [parm ../../../tip3p/ff12sb/run1/build/noWAt.topo.hmr]
	Reading '../../../tip3p/ff12sb/run1/build/noWAt.topo.hmr' as Amber Topology
  [trajin ../ctraj.c5]
	Reading '../ctraj.c5' as Amber NetCDF
  [reference ../../../A-form.pdb [a-form]]
	Reading '../../../A-form.pdb' as PDB
	Setting active reference for distance-based masks: 'A-form.pdb'
  [rmsd rms_2_aform :1,2&!@H= ref [a-form] mass]
    RMSD: (:1,2&!@H*), reference is "[a-form]:1" (:1,2&!@H*), mass-weighted.
	Best-fit RMSD will be calculated, coords will be rotated and translated.
  [distance dist_sugar_ox :1@O2' :2@O4']
    DISTANCE: :1@O2' to :2@O4', center of mass.
  [distance dist_N3-O5p :1@N3 :1@O5']
    DISTANCE: :1@N3 to :1@O5', center of mass.
  [distance COM :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 :2@N1,C6,H6,C5,H5,C4,N4,H41,H42,N3,C2,O2]
    DISTANCE: :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 to :2@N1,C6,H6,C5,H5,C4,N4,H41,H42,N3,C2,O2, center of mass.
  [dihedral g1 :1@O5' :1@C5' :1@C4' :1@C3' type gamma]
    DIHEDRAL: [:1@O5']-[:1@C5']-[:1@C4']-[:1@C3']
              Output range is -180 to 180 degrees.
  [dihedral d1 :1@C5' :1@C4' :1@C3' :1@O3' type delta]
    DIHEDRAL: [:1@C5']-[:1@C4']-[:1@C3']-[:1@O3']
              Output range is -180 to 180 degrees.
  [dihedral e1 :1@C4' :1@C3' :1@O3' :2@P type epsilon]
    DIHEDRAL: [:1@C4']-[:1@C3']-[:1@O3']-[:2@P]
              Output range is -180 to 180 degrees.
  [dihedral z1 :1@C3' :1@O3' :2@P :2@O5' type zeta]
    DIHEDRAL: [:1@C3']-[:1@O3']-[:2@P]-[:2@O5']
              Output range is -180 to 180 degrees.
  [dihedral c1 :1@O4' :1@C1' :1@N9 :1@C4 type chi]
    DIHEDRAL: [:1@O4']-[:1@C1']-[:1@N9]-[:1@C4]
              Output range is -180 to 180 degrees.
  [dihedral a2 :1@O3' :2@P :2@O5' :2@C5' type alpha]
    DIHEDRAL: [:1@O3']-[:2@P]-[:2@O5']-[:2@C5']
              Output range is -180 to 180 degrees.
  [dihedral b2 :2@P :2@O5' :2@C5' :2@C4' type beta]
    DIHEDRAL: [:2@P]-[:2@O5']-[:2@C5']-[:2@C4']
              Output range is -180 to 180 degrees.
  [dihedral g2 :2@O5' :2@C5' :2@C4' :2@C3' type gamma]
    DIHEDRAL: [:2@O5']-[:2@C5']-[:2@C4']-[:2@C3']
              Output range is -180 to 180 degrees.
  [dihedral d2 :2@C5' :2@C4' :2@C3' :2@O3' type delta]
    DIHEDRAL: [:2@C5']-[:2@C4']-[:2@C3']-[:2@O3']
              Output range is -180 to 180 degrees.
  [dihedral c2 :2@O4' :2@C1' :2@N1 :2@C2 type chi]
    DIHEDRAL: [:2@O4']-[:2@C1']-[:2@N1]-[:2@C2]
              Output range is -180 to 180 degrees.
  [run]
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES (1 total):
 0: noWAt.topo.hmr, 63 atoms, 2 res, box: Orthogonal, 1 mol

INPUT TRAJECTORIES (1 total):
 0: 'ctraj.c5' is a NetCDF AMBER trajectory, Parm noWAt.topo.hmr (Orthogonal box) (reading 43245 of 43245)
  Coordinate processing will occur on 43245 frames.

REFERENCE FRAMES (1 total):
    0: [a-form]:1
	Active reference frame for distance-based masks is '[a-form]:1'

BEGIN TRAJECTORY PROCESSING:
.....................................................
ACTION SETUP FOR PARM 'noWAt.topo.hmr' (14 actions):
  0: [rmsd rms_2_aform :1,2&!@H= ref [a-form] mass]
	Target mask: [:1,2&!@H*](39)
	Reference mask: [:1,2&!@H*](39)
Warning: Coordinates are being rotated and box coordinates are present.
Warning: Unit cell vectors are NOT rotated; imaging will not be possible
Warning:  after the RMS-fit is performed.
  1: [distance dist_sugar_ox :1@O2' :2@O4']
	:1@O2' (1 atoms) to :2@O4' (1 atoms), imaged.
  2: [distance dist_N3-O5p :1@N3 :1@O5']
	:1@N3 (1 atoms) to :1@O5' (1 atoms), imaged.
  3: [distance COM :1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 :2@N1,C6,H6,C5,H5,C4,N4,H41,H42,N3,C2,O2]
	:1@N1,C2,H2,N3,C4,C5,C6,N6,H61,H62,N7,C8,H8,N9 (14 atoms) to :2@N1,C6,H6,C5,H5,C4,N4,H41,H42,N3,C2,O2 (12 atoms), imaged.
  4: [dihedral g1 :1@O5' :1@C5' :1@C4' :1@C3' type gamma]
	 [:1@O5'](1) [:1@C5'](1) [:1@C4'](1) [:1@C3'](1)
  5: [dihedral d1 :1@C5' :1@C4' :1@C3' :1@O3' type delta]
	 [:1@C5'](1) [:1@C4'](1) [:1@C3'](1) [:1@O3'](1)
  6: [dihedral e1 :1@C4' :1@C3' :1@O3' :2@P type epsilon]
	 [:1@C4'](1) [:1@C3'](1) [:1@O3'](1) [:2@P](1)
  7: [dihedral z1 :1@C3' :1@O3' :2@P :2@O5' type zeta]
	 [:1@C3'](1) [:1@O3'](1) [:2@P](1) [:2@O5'](1)
  8: [dihedral c1 :1@O4' :1@C1' :1@N9 :1@C4 type chi]
	 [:1@O4'](1) [:1@C1'](1) [:1@N9](1) [:1@C4](1)
  9: [dihedral a2 :1@O3' :2@P :2@O5' :2@C5' type alpha]
	 [:1@O3'](1) [:2@P](1) [:2@O5'](1) [:2@C5'](1)
  10: [dihedral b2 :2@P :2@O5' :2@C5' :2@C4' type beta]
	 [:2@P](1) [:2@O5'](1) [:2@C5'](1) [:2@C4'](1)
  11: [dihedral g2 :2@O5' :2@C5' :2@C4' :2@C3' type gamma]
	 [:2@O5'](1) [:2@C5'](1) [:2@C4'](1) [:2@C3'](1)
  12: [dihedral d2 :2@C5' :2@C4' :2@C3' :2@O3' type delta]
	 [:2@C5'](1) [:2@C4'](1) [:2@C3'](1) [:2@O3'](1)
  13: [dihedral c2 :2@O4' :2@C1' :2@N1 :2@C2 type chi]
	 [:2@O4'](1) [:2@C1'](1) [:2@N1](1) [:2@C2](1)
----- ctraj.c5 (1-43245, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 43245 frames and processed 43245 frames.
TIME: Avg. throughput= 79338.7247 frames / second.

ACTION OUTPUT:

DATASETS (14 total):
	rms_2_aform "rms_2_aform" (double, rms), size is 43245
	dist_sugar_ox "dist_sugar_ox" (double, distance), size is 43245
	dist_N3-O5p "dist_N3-O5p" (double, distance), size is 43245
	COM "COM" (double, distance), size is 43245
	g1 "g1" (double, torsion(gamma)), size is 43245
	d1 "d1" (double, torsion(delta)), size is 43245
	e1 "e1" (double, torsion(epsilon)), size is 43245
	z1 "z1" (double, torsion(zeta)), size is 43245
	c1 "c1" (double, torsion(chin)), size is 43245
	a2 "a2" (double, torsion(alpha)), size is 43245
	b2 "b2" (double, torsion(beta)), size is 43245
	g2 "g2" (double, torsion(gamma)), size is 43245
	d2 "d2" (double, torsion(delta)), size is 43245
	c2 "c2" (double, torsion(chin)), size is 43245

RUN TIMING:
TIME:		Init               : 0.0001 s (  0.01%)
TIME:		Trajectory Process : 0.5451 s ( 99.98%)
TIME:		Action Post        : 0.0000 s (  0.00%)
TIME:		Analysis           : 0.0000 s (  0.00%)
TIME:		Data File Write    : 0.0000 s (  0.01%)
TIME:		Other              : 0.0000 s (  0.00%)
TIME:	Run Total 0.5452 s
---------- RUN END ---------------------------------------------------
  [avg rms_2_aform out avg-rmsd-all.dat]
    AVERAGE: Calculating average of 1 data sets.
	Data set base name 'AVERAGE_00016'
	Output to to 'avg-rmsd-all.dat'
  [hist rms_2_aform,0,5,0.1 out rmsd-hist.dat name RMSD norm]
	Hist: rmsd-hist.dat: Set up for 1 dimensions using the following datasets:
	[ rms_2_aform ]
	norm: Sum over bins will be normalized to 1.0.
  [hist COM,0,10,0.1 out COM-hist.dat name CoM norm]
	Hist: COM-hist.dat: Set up for 1 dimensions using the following datasets:
	[ COM ]
	norm: Sum over bins will be normalized to 1.0.
  [hist dist_sugar_ox,0,10,0.1 out distO2O4-hist.dat norm]
	Hist: distO2O4-hist.dat: Set up for 1 dimensions using the following datasets:
	[ dist_sugar_ox ]
	norm: Sum over bins will be normalized to 1.0.
  [hist dist_N3-O5p,0,10,0.1 out distN3-O5p-hist.dat norm]
	Hist: distN3-O5p-hist.dat: Set up for 1 dimensions using the following datasets:
	[ dist_N3-O5p ]
	norm: Sum over bins will be normalized to 1.0.
  [hist rms_2_aform,0,5,0.1 dist_sugar_ox,0,10,0.1 out 2dhist_rms-dist.gnu norm]
	Hist: 2dhist_rms-dist.gnu: Set up for 2 dimensions using the following datasets:
	[ rms_2_aform dist_sugar_ox ]
	norm: Sum over bins will be normalized to 1.0.
  [hist g1,-180,180,1 out dihed_g1-hist.dat name gamma_1 norm]
	Hist: dihed_g1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ g1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist d1,-180,180,1 out dihed_d1-hist.dat name delta_1 norm]
	Hist: dihed_d1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ d1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist e1,-180,180,1 out dihed_e1-hist.dat name epsilon_1 norm]
	Hist: dihed_e1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ e1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist z1,-180,180,1 out dihed_z1-hist.dat name zeta_1 norm]
	Hist: dihed_z1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ z1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist c1,-180,180,1 out dihed_c1-hist.dat name chi_1 norm]
	Hist: dihed_c1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ c1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist a2,-180,180,1 out dihed_a2-hist.dat name alpha_2 norm]
	Hist: dihed_a2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ a2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist b2,-180,180,1 out dihed_b2-hist.dat name beta_2 norm]
	Hist: dihed_b2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ b2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist g2,-180,180,1 out dihed_g2-hist.dat name gamma_2 norm]
	Hist: dihed_g2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ g2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist d2,-180,180,1 out dihed_d2-hist.dat name delta_2 norm]
	Hist: dihed_d2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ d2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist c2,-180,180,1 out dihed_c2-hist.dat name chi_2 norm]
	Hist: dihed_c2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ c2 ]
	norm: Sum over bins will be normalized to 1.0.
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES (1 total):
 0: noWAt.topo.hmr, 63 atoms, 2 res, box: Orthogonal, 1 mol

INPUT TRAJECTORIES (1 total):
 0: 'ctraj.c5' is a NetCDF AMBER trajectory, Parm noWAt.topo.hmr (Orthogonal box) (reading 43245 of 43245)
  Coordinate processing will occur on 43245 frames.

REFERENCE FRAMES (1 total):
    0: [a-form]:1
	Active reference frame for distance-based masks is '[a-form]:1'

BEGIN TRAJECTORY PROCESSING:
----- ctraj.c5 (1-43245, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 43245 frames and processed 43245 frames.
TIME: Avg. throughput= 536259.0214 frames / second.

ACTION OUTPUT:

ANALYSIS: Performing 16 analyses:
  0: [avg rms_2_aform out avg-rmsd-all.dat]
	1: rms_2_aform
  1: [hist rms_2_aform,0,5,0.1 out rmsd-hist.dat name RMSD norm]
		Calculating bins from min=0 max=5 step=0.1.
	Dim rms_2_aform: 0.000000->5.000000, step 0.100000, 50 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 50
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  2: [hist COM,0,10,0.1 out COM-hist.dat name CoM norm]
		Calculating bins from min=0 max=10 step=0.1.
	Dim COM: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Warning: Frame 75 Coordinates out of bounds (-1)
	Warning: Frame 85 Coordinates out of bounds (-1)
	Warning: Frame 376 Coordinates out of bounds (-1)
	Warning: Frame 557 Coordinates out of bounds (-1)
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	Warning: Frame 17085 Coordinates out of bounds (-1)
	Warning: Frame 17245 Coordinates out of bounds (-1)
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	Warning: Frame 17326 Coordinates out of bounds (-1)
	Warning: Frame 17364 Coordinates out of bounds (-1)
	Warning: Frame 17465 Coordinates out of bounds (-1)
	Warning: Frame 17496 Coordinates out of bounds (-1)
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	Warning: Frame 17551 Coordinates out of bounds (-1)
	Warning: Frame 17597 Coordinates out of bounds (-1)
	Warning: Frame 17664 Coordinates out of bounds (-1)
	Warning: Frame 17718 Coordinates out of bounds (-1)
	Warning: Frame 17760 Coordinates out of bounds (-1)
	Warning: Frame 17832 Coordinates out of bounds (-1)
	Warning: Frame 17854 Coordinates out of bounds (-1)
	Warning: Frame 17855 Coordinates out of bounds (-1)
	Warning: Frame 17946 Coordinates out of bounds (-1)
	Warning: Frame 18053 Coordinates out of bounds (-1)
	Warning: Frame 18065 Coordinates out of bounds (-1)
	Warning: Frame 18086 Coordinates out of bounds (-1)
	Warning: Frame 18087 Coordinates out of bounds (-1)
	Warning: Frame 18098 Coordinates out of bounds (-1)
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	Warning: Frame 18254 Coordinates out of bounds (-1)
	Warning: Frame 18255 Coordinates out of bounds (-1)
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	Warning: Frame 18296 Coordinates out of bounds (-1)
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	Warning: Frame 18546 Coordinates out of bounds (-1)
	Warning: Frame 18581 Coordinates out of bounds (-1)
	Warning: Frame 18582 Coordinates out of bounds (-1)
	Warning: Frame 18584 Coordinates out of bounds (-1)
	Warning: Frame 18732 Coordinates out of bounds (-1)
	Warning: Frame 18746 Coordinates out of bounds (-1)
	Warning: Frame 18777 Coordinates out of bounds (-1)
	Warning: Frame 18818 Coordinates out of bounds (-1)
	Warning: Frame 18895 Coordinates out of bounds (-1)
	Warning: Frame 18948 Coordinates out of bounds (-1)
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	Warning: Frame 19403 Coordinates out of bounds (-1)
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	Warning: Frame 19483 Coordinates out of bounds (-1)
	Warning: Frame 19505 Coordinates out of bounds (-1)
	Warning: Frame 19538 Coordinates out of bounds (-1)
	Warning: Frame 19551 Coordinates out of bounds (-1)
	Warning: Frame 19552 Coordinates out of bounds (-1)
	Warning: Frame 19835 Coordinates out of bounds (-1)
	Warning: Frame 19854 Coordinates out of bounds (-1)
	Warning: Frame 20012 Coordinates out of bounds (-1)
	Warning: Frame 20078 Coordinates out of bounds (-1)
	Warning: Frame 20093 Coordinates out of bounds (-1)
	Warning: Frame 20136 Coordinates out of bounds (-1)
	Warning: Frame 20197 Coordinates out of bounds (-1)
	Warning: Frame 20308 Coordinates out of bounds (-1)
	Warning: Frame 20326 Coordinates out of bounds (-1)
	Warning: Frame 20363 Coordinates out of bounds (-1)
	Warning: Frame 20386 Coordinates out of bounds (-1)
	Warning: Frame 20466 Coordinates out of bounds (-1)
	Warning: Frame 20536 Coordinates out of bounds (-1)
	Warning: Frame 20560 Coordinates out of bounds (-1)
	Warning: Frame 20638 Coordinates out of bounds (-1)
	Warning: Frame 20664 Coordinates out of bounds (-1)
	Warning: Frame 20724 Coordinates out of bounds (-1)
	Warning: Frame 20781 Coordinates out of bounds (-1)
	Warning: Frame 20789 Coordinates out of bounds (-1)
	Warning: Frame 20939 Coordinates out of bounds (-1)
	Warning: Frame 20949 Coordinates out of bounds (-1)
	Warning: Frame 21033 Coordinates out of bounds (-1)
	Warning: Frame 21123 Coordinates out of bounds (-1)
	Warning: Frame 21124 Coordinates out of bounds (-1)
	Warning: Frame 21168 Coordinates out of bounds (-1)
	Warning: Frame 21180 Coordinates out of bounds (-1)
	Warning: Frame 21209 Coordinates out of bounds (-1)
	Warning: Frame 21212 Coordinates out of bounds (-1)
	Warning: Frame 21266 Coordinates out of bounds (-1)
	Warning: Frame 21321 Coordinates out of bounds (-1)
	Warning: Frame 21327 Coordinates out of bounds (-1)
	Warning: Frame 21356 Coordinates out of bounds (-1)
	Warning: Frame 21406 Coordinates out of bounds (-1)
	Warning: Frame 21459 Coordinates out of bounds (-1)
	Warning: Frame 21483 Coordinates out of bounds (-1)
	Warning: Frame 21513 Coordinates out of bounds (-1)
	Warning: Frame 21519 Coordinates out of bounds (-1)
	Warning: Frame 21531 Coordinates out of bounds (-1)
	Warning: Frame 21560 Coordinates out of bounds (-1)
	Warning: Frame 21569 Coordinates out of bounds (-1)
	Warning: Frame 21604 Coordinates out of bounds (-1)
	Warning: Frame 21626 Coordinates out of bounds (-1)
	Warning: Frame 21630 Coordinates out of bounds (-1)
	Warning: Frame 21683 Coordinates out of bounds (-1)
	Warning: Frame 21694 Coordinates out of bounds (-1)
	Warning: Frame 21734 Coordinates out of bounds (-1)
	Warning: Frame 21745 Coordinates out of bounds (-1)
	Warning: Frame 21835 Coordinates out of bounds (-1)
	Warning: Frame 21839 Coordinates out of bounds (-1)
	Warning: Frame 21921 Coordinates out of bounds (-1)
	Warning: Frame 21988 Coordinates out of bounds (-1)
	Warning: Frame 22372 Coordinates out of bounds (-1)
	Warning: Frame 22507 Coordinates out of bounds (-1)
	Warning: Frame 22626 Coordinates out of bounds (-1)
	Warning: Frame 22805 Coordinates out of bounds (-1)
	Warning: Frame 22884 Coordinates out of bounds (-1)
	Warning: Frame 23059 Coordinates out of bounds (-1)
	Warning: Frame 23073 Coordinates out of bounds (-1)
	Warning: Frame 23078 Coordinates out of bounds (-1)
	Warning: Frame 23085 Coordinates out of bounds (-1)
	Warning: Frame 23104 Coordinates out of bounds (-1)
	Warning: Frame 23330 Coordinates out of bounds (-1)
	Warning: Frame 23361 Coordinates out of bounds (-1)
	Warning: Frame 23404 Coordinates out of bounds (-1)
	Warning: Frame 23563 Coordinates out of bounds (-1)
	Warning: Frame 23565 Coordinates out of bounds (-1)
	Warning: Frame 23578 Coordinates out of bounds (-1)
	Warning: Frame 23611 Coordinates out of bounds (-1)
	Warning: Frame 23689 Coordinates out of bounds (-1)
	Warning: Frame 23699 Coordinates out of bounds (-1)
	Warning: Frame 23842 Coordinates out of bounds (-1)
	Warning: Frame 23859 Coordinates out of bounds (-1)
	Warning: Frame 23905 Coordinates out of bounds (-1)
	Warning: Frame 23906 Coordinates out of bounds (-1)
	Warning: Frame 23926 Coordinates out of bounds (-1)
	Warning: Frame 23975 Coordinates out of bounds (-1)
	Warning: Frame 24018 Coordinates out of bounds (-1)
	Warning: Frame 24093 Coordinates out of bounds (-1)
	Warning: Frame 24094 Coordinates out of bounds (-1)
	Warning: Frame 24099 Coordinates out of bounds (-1)
	Warning: Frame 24114 Coordinates out of bounds (-1)
	Warning: Frame 24137 Coordinates out of bounds (-1)
	Warning: Frame 24138 Coordinates out of bounds (-1)
	Warning: Frame 24141 Coordinates out of bounds (-1)
	Warning: Frame 24144 Coordinates out of bounds (-1)
	Warning: Frame 24147 Coordinates out of bounds (-1)
	Warning: Frame 24188 Coordinates out of bounds (-1)
	Warning: Frame 24244 Coordinates out of bounds (-1)
	Warning: Frame 24248 Coordinates out of bounds (-1)
	Warning: Frame 24262 Coordinates out of bounds (-1)
	Warning: Frame 24288 Coordinates out of bounds (-1)
	Warning: Frame 24321 Coordinates out of bounds (-1)
	Warning: Frame 24322 Coordinates out of bounds (-1)
	Warning: Frame 24327 Coordinates out of bounds (-1)
	Warning: Frame 24351 Coordinates out of bounds (-1)
	Warning: Frame 24380 Coordinates out of bounds (-1)
	Warning: Frame 24382 Coordinates out of bounds (-1)
	Warning: Frame 24384 Coordinates out of bounds (-1)
	Warning: Frame 24427 Coordinates out of bounds (-1)
	Warning: Frame 24465 Coordinates out of bounds (-1)
	Warning: Frame 24473 Coordinates out of bounds (-1)
	Warning: Frame 24476 Coordinates out of bounds (-1)
	Warning: Frame 24477 Coordinates out of bounds (-1)
	Warning: Frame 24501 Coordinates out of bounds (-1)
	Warning: Frame 24513 Coordinates out of bounds (-1)
	Warning: Frame 24523 Coordinates out of bounds (-1)
	Warning: Frame 24594 Coordinates out of bounds (-1)
	Warning: Frame 24601 Coordinates out of bounds (-1)
	Warning: Frame 24629 Coordinates out of bounds (-1)
	Warning: Frame 24630 Coordinates out of bounds (-1)
	Warning: Frame 24665 Coordinates out of bounds (-1)
	Warning: Frame 24746 Coordinates out of bounds (-1)
	Warning: Frame 24777 Coordinates out of bounds (-1)
	Warning: Frame 24866 Coordinates out of bounds (-1)
	Warning: Frame 24877 Coordinates out of bounds (-1)
	Warning: Frame 24886 Coordinates out of bounds (-1)
	Warning: Frame 24963 Coordinates out of bounds (-1)
	Warning: Frame 25012 Coordinates out of bounds (-1)
	Warning: Frame 25024 Coordinates out of bounds (-1)
	Warning: Frame 25027 Coordinates out of bounds (-1)
	Warning: Frame 25058 Coordinates out of bounds (-1)
	Warning: Frame 25077 Coordinates out of bounds (-1)
	Warning: Frame 25099 Coordinates out of bounds (-1)
	Warning: Frame 25101 Coordinates out of bounds (-1)
	Warning: Frame 25106 Coordinates out of bounds (-1)
	Warning: Frame 25179 Coordinates out of bounds (-1)
	Warning: Frame 25192 Coordinates out of bounds (-1)
	Warning: Frame 25213 Coordinates out of bounds (-1)
	Warning: Frame 25288 Coordinates out of bounds (-1)
	Warning: Frame 25315 Coordinates out of bounds (-1)
	Warning: Frame 25373 Coordinates out of bounds (-1)
	Warning: Frame 25390 Coordinates out of bounds (-1)
	Warning: Frame 25418 Coordinates out of bounds (-1)
	Warning: Frame 25420 Coordinates out of bounds (-1)
	Warning: Frame 25467 Coordinates out of bounds (-1)
	Warning: Frame 25511 Coordinates out of bounds (-1)
	Warning: Frame 25557 Coordinates out of bounds (-1)
	Warning: Frame 25616 Coordinates out of bounds (-1)
	Warning: Frame 25662 Coordinates out of bounds (-1)
	Warning: Frame 25663 Coordinates out of bounds (-1)
	Warning: Frame 25664 Coordinates out of bounds (-1)
	Warning: Frame 25803 Coordinates out of bounds (-1)
	Warning: Frame 25804 Coordinates out of bounds (-1)
	Warning: Frame 25825 Coordinates out of bounds (-1)
	Warning: Frame 25924 Coordinates out of bounds (-1)
	Warning: Frame 25925 Coordinates out of bounds (-1)
	Warning: Frame 25964 Coordinates out of bounds (-1)
	Warning: Frame 26100 Coordinates out of bounds (-1)
	Warning: Frame 26189 Coordinates out of bounds (-1)
	Warning: Frame 26215 Coordinates out of bounds (-1)
	Warning: Frame 26240 Coordinates out of bounds (-1)
	Warning: Frame 26241 Coordinates out of bounds (-1)
	Warning: Frame 26287 Coordinates out of bounds (-1)
	Warning: Frame 26292 Coordinates out of bounds (-1)
	Warning: Frame 26302 Coordinates out of bounds (-1)
	Warning: Frame 26330 Coordinates out of bounds (-1)
	Warning: Frame 26373 Coordinates out of bounds (-1)
	Warning: Frame 26382 Coordinates out of bounds (-1)
	Warning: Frame 26384 Coordinates out of bounds (-1)
	Warning: Frame 26386 Coordinates out of bounds (-1)
	Warning: Frame 26452 Coordinates out of bounds (-1)
	Warning: Frame 26489 Coordinates out of bounds (-1)
	Warning: Frame 26528 Coordinates out of bounds (-1)
	Warning: Frame 26574 Coordinates out of bounds (-1)
	Warning: Frame 26579 Coordinates out of bounds (-1)
	Warning: Frame 26581 Coordinates out of bounds (-1)
	Warning: Frame 26592 Coordinates out of bounds (-1)
	Warning: Frame 26636 Coordinates out of bounds (-1)
	Warning: Frame 26656 Coordinates out of bounds (-1)
	Warning: Frame 26738 Coordinates out of bounds (-1)
	Warning: Frame 26761 Coordinates out of bounds (-1)
	Warning: Frame 26777 Coordinates out of bounds (-1)
	Warning: Frame 26790 Coordinates out of bounds (-1)
	Warning: Frame 26885 Coordinates out of bounds (-1)
	Warning: Frame 26952 Coordinates out of bounds (-1)
	Warning: Frame 26961 Coordinates out of bounds (-1)
	Warning: Frame 26978 Coordinates out of bounds (-1)
	Warning: Frame 27032 Coordinates out of bounds (-1)
	Warning: Frame 27033 Coordinates out of bounds (-1)
	Warning: Frame 27050 Coordinates out of bounds (-1)
	Warning: Frame 27051 Coordinates out of bounds (-1)
	Warning: Frame 27064 Coordinates out of bounds (-1)
	Warning: Frame 27097 Coordinates out of bounds (-1)
	Warning: Frame 27130 Coordinates out of bounds (-1)
	Warning: Frame 27147 Coordinates out of bounds (-1)
	Warning: Frame 27177 Coordinates out of bounds (-1)
	Warning: Frame 27180 Coordinates out of bounds (-1)
	Warning: Frame 27181 Coordinates out of bounds (-1)
	Warning: Frame 27185 Coordinates out of bounds (-1)
	Warning: Frame 27225 Coordinates out of bounds (-1)
	Warning: Frame 27256 Coordinates out of bounds (-1)
	Warning: Frame 27259 Coordinates out of bounds (-1)
	Warning: Frame 27283 Coordinates out of bounds (-1)
	Warning: Frame 27306 Coordinates out of bounds (-1)
	Warning: Frame 27307 Coordinates out of bounds (-1)
	Warning: Frame 27355 Coordinates out of bounds (-1)
	Warning: Frame 27357 Coordinates out of bounds (-1)
	Warning: Frame 27358 Coordinates out of bounds (-1)
	Warning: Frame 27359 Coordinates out of bounds (-1)
	Warning: Frame 27402 Coordinates out of bounds (-1)
	Warning: Frame 27430 Coordinates out of bounds (-1)
	Warning: Frame 27433 Coordinates out of bounds (-1)
	Warning: Frame 27468 Coordinates out of bounds (-1)
	Warning: Frame 27548 Coordinates out of bounds (-1)
	Warning: Frame 27578 Coordinates out of bounds (-1)
	Warning: Frame 27621 Coordinates out of bounds (-1)
	Warning: Frame 27638 Coordinates out of bounds (-1)
	Warning: Frame 27646 Coordinates out of bounds (-1)
	Warning: Frame 27664 Coordinates out of bounds (-1)
	Warning: Frame 27679 Coordinates out of bounds (-1)
	Warning: Frame 27717 Coordinates out of bounds (-1)
	Warning: Frame 27721 Coordinates out of bounds (-1)
	Warning: Frame 27723 Coordinates out of bounds (-1)
	Warning: Frame 27729 Coordinates out of bounds (-1)
	Warning: Frame 27745 Coordinates out of bounds (-1)
	Warning: Frame 27746 Coordinates out of bounds (-1)
	Warning: Frame 27793 Coordinates out of bounds (-1)
	Warning: Frame 27962 Coordinates out of bounds (-1)
	Warning: Frame 28127 Coordinates out of bounds (-1)
	Warning: Frame 28167 Coordinates out of bounds (-1)
	Warning: Frame 28195 Coordinates out of bounds (-1)
	Warning: Frame 28352 Coordinates out of bounds (-1)
	Warning: Frame 28364 Coordinates out of bounds (-1)
	Warning: Frame 28483 Coordinates out of bounds (-1)
	Warning: Frame 28506 Coordinates out of bounds (-1)
	Warning: Frame 28556 Coordinates out of bounds (-1)
	Warning: Frame 28611 Coordinates out of bounds (-1)
	Warning: Frame 28744 Coordinates out of bounds (-1)
	Warning: Frame 28830 Coordinates out of bounds (-1)
	Warning: Frame 28854 Coordinates out of bounds (-1)
	Warning: Frame 28855 Coordinates out of bounds (-1)
	Warning: Frame 28859 Coordinates out of bounds (-1)
	Warning: Frame 28920 Coordinates out of bounds (-1)
	Warning: Frame 29050 Coordinates out of bounds (-1)
	Warning: Frame 29068 Coordinates out of bounds (-1)
	Warning: Frame 29069 Coordinates out of bounds (-1)
	Warning: Frame 29110 Coordinates out of bounds (-1)
	Warning: Frame 29236 Coordinates out of bounds (-1)
	Warning: Frame 29298 Coordinates out of bounds (-1)
	Warning: Frame 29419 Coordinates out of bounds (-1)
	Warning: Frame 29604 Coordinates out of bounds (-1)
	Warning: Frame 29633 Coordinates out of bounds (-1)
	Warning: Frame 29638 Coordinates out of bounds (-1)
	Warning: Frame 29639 Coordinates out of bounds (-1)
	Warning: Frame 29640 Coordinates out of bounds (-1)
	Warning: Frame 29641 Coordinates out of bounds (-1)
	Warning: Frame 29774 Coordinates out of bounds (-1)
	Warning: Frame 29775 Coordinates out of bounds (-1)
	Warning: Frame 29776 Coordinates out of bounds (-1)
	Warning: Frame 29777 Coordinates out of bounds (-1)
	Warning: Frame 29829 Coordinates out of bounds (-1)
	Warning: Frame 29978 Coordinates out of bounds (-1)
	Warning: Frame 30191 Coordinates out of bounds (-1)
	Warning: Frame 30345 Coordinates out of bounds (-1)
	Warning: Frame 30346 Coordinates out of bounds (-1)
	Warning: Frame 30347 Coordinates out of bounds (-1)
	Warning: Frame 30348 Coordinates out of bounds (-1)
	Warning: Frame 30523 Coordinates out of bounds (-1)
	Warning: Frame 30740 Coordinates out of bounds (-1)
	Warning: Frame 30741 Coordinates out of bounds (-1)
	Warning: Frame 30765 Coordinates out of bounds (-1)
	Warning: Frame 30800 Coordinates out of bounds (-1)
	Warning: Frame 30920 Coordinates out of bounds (-1)
	Warning: Frame 31022 Coordinates out of bounds (-1)
	Warning: Frame 31091 Coordinates out of bounds (-1)
	Warning: Frame 31233 Coordinates out of bounds (-1)
	Warning: Frame 31298 Coordinates out of bounds (-1)
	Warning: Frame 31382 Coordinates out of bounds (-1)
	Warning: Frame 31567 Coordinates out of bounds (-1)
	Warning: Frame 31568 Coordinates out of bounds (-1)
	Warning: Frame 31630 Coordinates out of bounds (-1)
	Warning: Frame 31720 Coordinates out of bounds (-1)
	Warning: Frame 31846 Coordinates out of bounds (-1)
	Warning: Frame 31890 Coordinates out of bounds (-1)
	Warning: Frame 32069 Coordinates out of bounds (-1)
	Warning: Frame 32282 Coordinates out of bounds (-1)
	Warning: Frame 32660 Coordinates out of bounds (-1)
	Warning: Frame 32878 Coordinates out of bounds (-1)
	Warning: Frame 32963 Coordinates out of bounds (-1)
	Warning: Frame 32986 Coordinates out of bounds (-1)
	Warning: Frame 33054 Coordinates out of bounds (-1)
	Warning: Frame 33184 Coordinates out of bounds (-1)
	Warning: Frame 33262 Coordinates out of bounds (-1)
	Warning: Frame 33263 Coordinates out of bounds (-1)
	Warning: Frame 33317 Coordinates out of bounds (-1)
	Warning: Frame 33380 Coordinates out of bounds (-1)
	Warning: Frame 33383 Coordinates out of bounds (-1)
	Warning: Frame 33516 Coordinates out of bounds (-1)
	Warning: Frame 33571 Coordinates out of bounds (-1)
	Warning: Frame 33670 Coordinates out of bounds (-1)
	Warning: Frame 33768 Coordinates out of bounds (-1)
	Warning: Frame 33890 Coordinates out of bounds (-1)
	Warning: Frame 33941 Coordinates out of bounds (-1)
	Warning: Frame 33950 Coordinates out of bounds (-1)
	Warning: Frame 34062 Coordinates out of bounds (-1)
	Warning: Frame 34315 Coordinates out of bounds (-1)
	Warning: Frame 34317 Coordinates out of bounds (-1)
	Warning: Frame 34347 Coordinates out of bounds (-1)
	Warning: Frame 34350 Coordinates out of bounds (-1)
	Warning: Frame 34351 Coordinates out of bounds (-1)
	Warning: Frame 34352 Coordinates out of bounds (-1)
	Warning: Frame 34488 Coordinates out of bounds (-1)
	Warning: Frame 34509 Coordinates out of bounds (-1)
	Warning: Frame 34533 Coordinates out of bounds (-1)
	Warning: Frame 34571 Coordinates out of bounds (-1)
	Warning: Frame 34572 Coordinates out of bounds (-1)
	Warning: Frame 34673 Coordinates out of bounds (-1)
	Warning: Frame 34691 Coordinates out of bounds (-1)
	Warning: Frame 34723 Coordinates out of bounds (-1)
	Warning: Frame 34835 Coordinates out of bounds (-1)
	Warning: Frame 34904 Coordinates out of bounds (-1)
	Warning: Frame 34944 Coordinates out of bounds (-1)
	Warning: Frame 34945 Coordinates out of bounds (-1)
	Warning: Frame 34947 Coordinates out of bounds (-1)
	Warning: Frame 34948 Coordinates out of bounds (-1)
	Warning: Frame 34949 Coordinates out of bounds (-1)
	Warning: Frame 35040 Coordinates out of bounds (-1)
	Warning: Frame 35041 Coordinates out of bounds (-1)
	Warning: Frame 35218 Coordinates out of bounds (-1)
	Warning: Frame 35291 Coordinates out of bounds (-1)
	Warning: Frame 35415 Coordinates out of bounds (-1)
	Warning: Frame 35416 Coordinates out of bounds (-1)
	Warning: Frame 35635 Coordinates out of bounds (-1)
	Warning: Frame 35734 Coordinates out of bounds (-1)
	Warning: Frame 35881 Coordinates out of bounds (-1)
	Warning: Frame 35882 Coordinates out of bounds (-1)
	Warning: Frame 35884 Coordinates out of bounds (-1)
	Warning: Frame 35903 Coordinates out of bounds (-1)
	Warning: Frame 36025 Coordinates out of bounds (-1)
	Warning: Frame 36105 Coordinates out of bounds (-1)
	Warning: Frame 36106 Coordinates out of bounds (-1)
	Warning: Frame 36166 Coordinates out of bounds (-1)
	Warning: Frame 36223 Coordinates out of bounds (-1)
	Warning: Frame 36298 Coordinates out of bounds (-1)
	Warning: Frame 36331 Coordinates out of bounds (-1)
	Warning: Frame 36405 Coordinates out of bounds (-1)
	Warning: Frame 36407 Coordinates out of bounds (-1)
	Warning: Frame 36441 Coordinates out of bounds (-1)
	Warning: Frame 36460 Coordinates out of bounds (-1)
	Warning: Frame 36635 Coordinates out of bounds (-1)
	Warning: Frame 36636 Coordinates out of bounds (-1)
	Warning: Frame 36638 Coordinates out of bounds (-1)
	Warning: Frame 36640 Coordinates out of bounds (-1)
	Warning: Frame 36641 Coordinates out of bounds (-1)
	Warning: Frame 36647 Coordinates out of bounds (-1)
	Warning: Frame 36733 Coordinates out of bounds (-1)
	Warning: Frame 36736 Coordinates out of bounds (-1)
	Warning: Frame 36790 Coordinates out of bounds (-1)
	Warning: Frame 36944 Coordinates out of bounds (-1)
	Warning: Frame 36964 Coordinates out of bounds (-1)
	Warning: Frame 37057 Coordinates out of bounds (-1)
	Warning: Frame 37152 Coordinates out of bounds (-1)
	Warning: Frame 37387 Coordinates out of bounds (-1)
	Warning: Frame 37427 Coordinates out of bounds (-1)
	Warning: Frame 37446 Coordinates out of bounds (-1)
	Warning: Frame 37587 Coordinates out of bounds (-1)
	Warning: Frame 37588 Coordinates out of bounds (-1)
	Warning: Frame 37631 Coordinates out of bounds (-1)
	Warning: Frame 37697 Coordinates out of bounds (-1)
	Warning: Frame 37708 Coordinates out of bounds (-1)
	Warning: Frame 37915 Coordinates out of bounds (-1)
	Warning: Frame 37920 Coordinates out of bounds (-1)
	Warning: Frame 38037 Coordinates out of bounds (-1)
	Warning: Frame 38339 Coordinates out of bounds (-1)
	Warning: Frame 38340 Coordinates out of bounds (-1)
	Warning: Frame 38441 Coordinates out of bounds (-1)
	Warning: Frame 38524 Coordinates out of bounds (-1)
	Warning: Frame 38578 Coordinates out of bounds (-1)
	Warning: Frame 38579 Coordinates out of bounds (-1)
	Warning: Frame 38783 Coordinates out of bounds (-1)
	Warning: Frame 38817 Coordinates out of bounds (-1)
	Warning: Frame 38818 Coordinates out of bounds (-1)
	Warning: Frame 38945 Coordinates out of bounds (-1)
	Warning: Frame 39087 Coordinates out of bounds (-1)
	Warning: Frame 39222 Coordinates out of bounds (-1)
	Warning: Frame 39249 Coordinates out of bounds (-1)
	Warning: Frame 39251 Coordinates out of bounds (-1)
	Warning: Frame 39297 Coordinates out of bounds (-1)
	Warning: Frame 39458 Coordinates out of bounds (-1)
	Warning: Frame 39478 Coordinates out of bounds (-1)
	Warning: Frame 39581 Coordinates out of bounds (-1)
	Warning: Frame 39629 Coordinates out of bounds (-1)
	Warning: Frame 39682 Coordinates out of bounds (-1)
	Warning: Frame 39763 Coordinates out of bounds (-1)
	Warning: Frame 39768 Coordinates out of bounds (-1)
	Warning: Frame 39840 Coordinates out of bounds (-1)
	Warning: Frame 39882 Coordinates out of bounds (-1)
	Warning: Frame 39955 Coordinates out of bounds (-1)
	Warning: Frame 40135 Coordinates out of bounds (-1)
	Warning: Frame 40238 Coordinates out of bounds (-1)
	Warning: Frame 40241 Coordinates out of bounds (-1)
	Warning: Frame 40268 Coordinates out of bounds (-1)
	Warning: Frame 40269 Coordinates out of bounds (-1)
	Warning: Frame 40362 Coordinates out of bounds (-1)
	Warning: Frame 40433 Coordinates out of bounds (-1)
	Warning: Frame 40567 Coordinates out of bounds (-1)
	Warning: Frame 40632 Coordinates out of bounds (-1)
	Warning: Frame 40681 Coordinates out of bounds (-1)
	Warning: Frame 40717 Coordinates out of bounds (-1)
	Warning: Frame 40761 Coordinates out of bounds (-1)
	Warning: Frame 40855 Coordinates out of bounds (-1)
	Warning: Frame 40917 Coordinates out of bounds (-1)
	Warning: Frame 40970 Coordinates out of bounds (-1)
	Warning: Frame 41000 Coordinates out of bounds (-1)
	Warning: Frame 41030 Coordinates out of bounds (-1)
	Warning: Frame 41102 Coordinates out of bounds (-1)
	Warning: Frame 41128 Coordinates out of bounds (-1)
	Warning: Frame 41140 Coordinates out of bounds (-1)
	Warning: Frame 41141 Coordinates out of bounds (-1)
	Warning: Frame 41379 Coordinates out of bounds (-1)
	Warning: Frame 41430 Coordinates out of bounds (-1)
	Warning: Frame 41479 Coordinates out of bounds (-1)
	Warning: Frame 41554 Coordinates out of bounds (-1)
	Warning: Frame 41765 Coordinates out of bounds (-1)
	Warning: Frame 42077 Coordinates out of bounds (-1)
	Warning: Frame 42139 Coordinates out of bounds (-1)
	Warning: Frame 42328 Coordinates out of bounds (-1)
	Warning: Frame 42329 Coordinates out of bounds (-1)
	Warning: Frame 42461 Coordinates out of bounds (-1)
	Warning: Frame 42534 Coordinates out of bounds (-1)
	Warning: Frame 42566 Coordinates out of bounds (-1)
	Warning: Frame 42567 Coordinates out of bounds (-1)
	Warning: Frame 42770 Coordinates out of bounds (-1)
	Warning: Frame 42792 Coordinates out of bounds (-1)
	Warning: Frame 42963 Coordinates out of bounds (-1)
	Warning: Frame 42972 Coordinates out of bounds (-1)
	Warning: Frame 43005 Coordinates out of bounds (-1)
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 42573
  3: [hist dist_sugar_ox,0,10,0.1 out distO2O4-hist.dat norm]
		Calculating bins from min=0 max=10 step=0.1.
	Dim dist_sugar_ox: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  4: [hist dist_N3-O5p,0,10,0.1 out distN3-O5p-hist.dat norm]
		Calculating bins from min=0 max=10 step=0.1.
	Dim dist_N3-O5p: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  5: [hist rms_2_aform,0,5,0.1 dist_sugar_ox,0,10,0.1 out 2dhist_rms-dist.gnu norm]
		Calculating bins from min=0 max=5 step=0.1.
	Dim rms_2_aform: 0.000000->5.000000, step 0.100000, 50 bins.
		Calculating bins from min=0 max=10 step=0.1.
	Dim dist_sugar_ox: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 5000
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  6: [hist g1,-180,180,1 out dihed_g1-hist.dat name gamma_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim g1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  7: [hist d1,-180,180,1 out dihed_d1-hist.dat name delta_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim d1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  8: [hist e1,-180,180,1 out dihed_e1-hist.dat name epsilon_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim e1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  9: [hist z1,-180,180,1 out dihed_z1-hist.dat name zeta_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim z1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  10: [hist c1,-180,180,1 out dihed_c1-hist.dat name chi_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim c1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  11: [hist a2,-180,180,1 out dihed_a2-hist.dat name alpha_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim a2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  12: [hist b2,-180,180,1 out dihed_b2-hist.dat name beta_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim b2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  13: [hist g2,-180,180,1 out dihed_g2-hist.dat name gamma_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim g2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  14: [hist d2,-180,180,1 out dihed_d2-hist.dat name delta_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim d2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245
  15: [hist c2,-180,180,1 out dihed_c2-hist.dat name chi_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim c2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 43245 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 43245

TIME: Analyses took 0.0153 seconds.

DATASETS (36 total):
	rms_2_aform "rms_2_aform" (double, rms), size is 43245
	dist_sugar_ox "dist_sugar_ox" (double, distance), size is 43245
	dist_N3-O5p "dist_N3-O5p" (double, distance), size is 43245
	COM "COM" (double, distance), size is 43245
	g1 "g1" (double, torsion(gamma)), size is 43245
	d1 "d1" (double, torsion(delta)), size is 43245
	e1 "e1" (double, torsion(epsilon)), size is 43245
	z1 "z1" (double, torsion(zeta)), size is 43245
	c1 "c1" (double, torsion(chin)), size is 43245
	a2 "a2" (double, torsion(alpha)), size is 43245
	b2 "b2" (double, torsion(beta)), size is 43245
	g2 "g2" (double, torsion(gamma)), size is 43245
	d2 "d2" (double, torsion(delta)), size is 43245
	c2 "c2" (double, torsion(chin)), size is 43245
	AVERAGE_00016[avg] "AVERAGE_00016[avg]" (double), size is 1
	AVERAGE_00016[sd] "AVERAGE_00016[sd]" (double), size is 1
	AVERAGE_00016[ymin] "AVERAGE_00016[ymin]" (double), size is 1
	AVERAGE_00016[ymax] "AVERAGE_00016[ymax]" (double), size is 1
	AVERAGE_00016[yminidx] "AVERAGE_00016[yminidx]" (integer), size is 1
	AVERAGE_00016[ymaxidx] "AVERAGE_00016[ymaxidx]" (integer), size is 1
	AVERAGE_00016[names] "AVERAGE_00016[names]" (string), size is 1
	RMSD "RMSD" (double), size is 50
	CoM "CoM" (double), size is 100
	Hist_00025 "Hist_00025" (double), size is 100
	Hist_00026 "Hist_00026" (double), size is 100
	Hist_00027 "Hist_00027" (double matrix), size is 5000
	gamma_1 "gamma_1" (double), size is 360
	delta_1 "delta_1" (double), size is 360
	epsilon_1 "epsilon_1" (double), size is 360
	zeta_1 "zeta_1" (double), size is 360
	chi_1 "chi_1" (double), size is 360
	alpha_2 "alpha_2" (double), size is 360
	beta_2 "beta_2" (double), size is 360
	gamma_2 "gamma_2" (double), size is 360
	delta_2 "delta_2" (double), size is 360
	chi_2 "chi_2" (double), size is 360

DATAFILES (16 total):
  avg-rmsd-all.dat (Standard Data File):  AVERAGE_00016[avg] AVERAGE_00016[sd] AVERAGE_00016[ymin] AVERAGE_00016[ymax] AVERAGE_00016[yminidx] AVERAGE_00016[ymaxidx] AVERAGE_00016[names]
  rmsd-hist.dat (Standard Data File):  RMSD
  COM-hist.dat (Standard Data File):  CoM
  distO2O4-hist.dat (Standard Data File):  Hist_00025
  distN3-O5p-hist.dat (Standard Data File):  Hist_00026
  2dhist_rms-dist.gnu (Gnuplot File):  Hist_00027
  dihed_g1-hist.dat (Standard Data File):  gamma_1
  dihed_d1-hist.dat (Standard Data File):  delta_1
  dihed_e1-hist.dat (Standard Data File):  epsilon_1
  dihed_z1-hist.dat (Standard Data File):  zeta_1
  dihed_c1-hist.dat (Standard Data File):  chi_1
  dihed_a2-hist.dat (Standard Data File):  alpha_2
  dihed_b2-hist.dat (Standard Data File):  beta_2
  dihed_g2-hist.dat (Standard Data File):  gamma_2
  dihed_d2-hist.dat (Standard Data File):  delta_2
  dihed_c2-hist.dat (Standard Data File):  chi_2

RUN TIMING:
TIME:		Init               : 0.0001 s (  0.06%)
TIME:		Trajectory Process : 0.0806 s ( 60.16%)
TIME:		Action Post        : 0.0000 s (  0.00%)
TIME:		Analysis           : 0.0153 s ( 11.44%)
TIME:		Data File Write    : 0.0380 s ( 28.32%)
TIME:		Other              : 0.0000 s (  0.00%)
TIME:	Run Total 0.1341 s
---------- RUN END ---------------------------------------------------
TIME: Total execution time: 0.7683 seconds.
--------------------------------------------------------------------------------
To cite CPPTRAJ use:
Daniel R. Roe and Thomas E. Cheatham, III, "PTRAJ and CPPTRAJ: Software for
  Processing and Analysis of Molecular Dynamics Trajectory Data". J. Chem.
  Theory Comput., 2013, 9 (7), pp 3084-3095.