____ .---. ,-----. _____ .' `,.': :'' : :.' `. | : : ' ' ' ' : : \ | ' ' ' ' \ | v \ | | v \ | | | v \ | P | A | R | M | \ | | | | | \ | | | | | \ | | | | | \ | ===== | | | | ) \ --- /| ===== | | | / `---' \ --- /| ===== | ===== | / `---' \ ---- A ----- / / `----'.`-----' / / / '-._ ED / '. / `----' ParmEd: a Parameter file Editor ['parmed_Chen-Garcia.in'] Reading actions from parmed_Chen-Garcia.in Adding prmtop full-ff99.topo to parm list. full-ff99.topo is the active parm. ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 12 C8 CK : Type index: 8 ATOM 15 C5 CB : Type index: 8 ATOM 16 C6 CA : Type index: 8 ATOM 21 C2 CQ : Type index: 8 ATOM 24 C4 CB : Type index: 8 ATOM 45 C6 CM : Type index: 8 ATOM 47 C5 CM : Type index: 8 ATOM 49 C4 CA : Type index: 8 ATOM NUMBER NAME TYPE --------------------------------------------- ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 55 O2 O : Type index: 16 Setting LJ @%CA-@%OW pairwise interaction to have Rmin = 3.67622 and Epsilon = 0.10293 Setting LJ @%NA-@%OW pairwise interaction to have Rmin = 3.59221 and Epsilon = 0.14472 Setting LJ @%O-@%OW pairwise interaction to have Rmin = 3.42941 and Epsilon = 0.16085 Outputting Amber topology file full.topo Done!