_____ __...---'-----`---...__ _=============================== ______________,/' `---..._______...---' (______________). . ,--' / /.---' `. / '--------_ - - - - _/ P A R M E D `~~~~~~~~' ParmEd: a Parameter file Editor ['../../../../../scripts/parmed_Chen-Garcia.in'] Reading actions from ../../../../../scripts/parmed_Chen-Garcia.in Adding prmtop full-ff99.topo to parm list. full-ff99.topo is the active parm. ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 12 C8 CK : Type index: 8 ATOM 15 C5 CB : Type index: 8 ATOM 16 C6 CA : Type index: 8 ATOM 21 C2 CQ : Type index: 8 ATOM 24 C4 CB : Type index: 8 ATOM 45 C6 CM : Type index: 8 ATOM 47 C5 CM : Type index: 8 ATOM 49 C4 CA : Type index: 8 ATOM NUMBER NAME TYPE --------------------------------------------- ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 55 O2 O : Type index: 16 Setting LJ @%CA-@%OW pairwise interaction to have Rmin = 3.67622 and Epsilon = 0.10293 Setting LJ @%NA-@%OW pairwise interaction to have Rmin = 3.59221 and Epsilon = 0.14472 Setting LJ @%O-@%OW pairwise interaction to have Rmin = 3.42941 and Epsilon = 0.16085 Outputting Amber topology file full.topo Done!