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ParmEd: a Parameter file Editor


['../../../../../scripts/parmed_Chen-Garcia.in']
Reading actions from ../../../../../scripts/parmed_Chen-Garcia.in

Adding prmtop full-ff99.topo to parm list. full-ff99.topo is the active parm.

  ATOM NUMBER   NAME TYPE
---------------------------------------------
ATOM 12         C8   CK  : Type index: 8
ATOM 15         C5   CB  : Type index: 8
ATOM 16         C6   CA  : Type index: 8
ATOM 21         C2   CQ  : Type index: 8
ATOM 24         C4   CB  : Type index: 8
ATOM 45         C8   CK  : Type index: 8
ATOM 48         C5   CB  : Type index: 8
ATOM 53         C2   CA  : Type index: 8
ATOM 58         C4   CB  : Type index: 8


  ATOM NUMBER   NAME TYPE
---------------------------------------------
ATOM 11         N9   N*  : Type index: 7
ATOM 14         N7   NB  : Type index: 7
ATOM 17         N6   N2  : Type index: 7
ATOM 20         N1   NC  : Type index: 7
ATOM 23         N3   NC  : Type index: 7
ATOM 44         N9   N*  : Type index: 7
ATOM 47         N7   NB  : Type index: 7
ATOM 51         N1   NA  : Type index: 7
ATOM 54         N2   N2  : Type index: 7
ATOM 57         N3   NC  : Type index: 7


  ATOM NUMBER   NAME TYPE
---------------------------------------------
ATOM 50         O6   O   : Type index: 14

Setting LJ @%CA-@%OW pairwise interaction to have Rmin =          3.67622 and Epsilon =          0.10293
Setting LJ @%NA-@%OW pairwise interaction to have Rmin =          3.59221 and Epsilon =          0.14472
Setting LJ @%O-@%OW pairwise interaction to have Rmin =          3.42941 and Epsilon =          0.16085
Outputting Amber topology file full.topo
Done!