/^^^/ /] / ] / ] _______/ ]___ / ] / \_____/ / _/ [@] \ \ \ /.. | | ] VVVvvv\ | | _/\ ] P A R M E D | / \ ] AAA^^^^^ / \] \_________\ \_____/ \ \ \____\ ParmEd: a Parameter file Editor ['../../../../../scripts/parmed_Chen-Garcia.in'] Reading actions from ../../../../../scripts/parmed_Chen-Garcia.in Adding prmtop full-ff99.topo to parm list. full-ff99.topo is the active parm. ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 12 C6 CM : Type index: 8 ATOM 14 C5 CM : Type index: 8 ATOM 16 C4 CA : Type index: 8 ATOM 43 C8 CK : Type index: 8 ATOM 46 C5 CB : Type index: 8 ATOM 47 C6 CA : Type index: 8 ATOM 52 C2 CQ : Type index: 8 ATOM 55 C4 CB : Type index: 8 ATOM NUMBER NAME TYPE --------------------------------------------- ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 22 O2 O : Type index: 13 Setting LJ @%CA-@%OW pairwise interaction to have Rmin = 3.67622 and Epsilon = 0.10293 Setting LJ @%NA-@%OW pairwise interaction to have Rmin = 3.59221 and Epsilon = 0.14472 Setting LJ @%O-@%OW pairwise interaction to have Rmin = 3.42941 and Epsilon = 0.16085 Outputting Amber topology file full.topo Done!