/^^^/ /] / ] / ] _______/ ]___ / ] / \_____/ / _/ [@] \ \ \ /.. | | ] VVVvvv\ | | _/\ ] P A R M E D | / \ ] AAA^^^^^ / \] \_________\ \_____/ \ \ \____\ ParmEd: a Parameter file Editor ['../../../../../scripts/parmed_Chen-Garcia.in'] Reading actions from ../../../../../scripts/parmed_Chen-Garcia.in Adding prmtop full-ff99.topo to parm list. full-ff99.topo is the active parm. ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 12 C8 CK : Type index: 8 ATOM 15 C5 CB : Type index: 8 ATOM 20 C2 CA : Type index: 8 ATOM 25 C4 CB : Type index: 8 ATOM 46 C8 CK : Type index: 8 ATOM 49 C5 CB : Type index: 8 ATOM 54 C2 CA : Type index: 8 ATOM 59 C4 CB : Type index: 8 ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 11 N9 N* : Type index: 7 ATOM 14 N7 NB : Type index: 7 ATOM 18 N1 NA : Type index: 7 ATOM 21 N2 N2 : Type index: 7 ATOM 24 N3 NC : Type index: 7 ATOM 45 N9 N* : Type index: 7 ATOM 48 N7 NB : Type index: 7 ATOM 52 N1 NA : Type index: 7 ATOM 55 N2 N2 : Type index: 7 ATOM 58 N3 NC : Type index: 7 ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 17 O6 O : Type index: 11 ATOM 51 O6 O : Type index: 11 Setting LJ @%CA-@%OW pairwise interaction to have Rmin = 3.67622 and Epsilon = 0.10293 Setting LJ @%NA-@%OW pairwise interaction to have Rmin = 3.59221 and Epsilon = 0.14472 Setting LJ @%O-@%OW pairwise interaction to have Rmin = 3.42941 and Epsilon = 0.16085 Outputting Amber topology file full.topo Done!