./ | | \. .:( |i __ j| ):`. .' `._ |`::::'| _.' `. .' "---.j `::' f.---" `. _____/ ___ ____ __ __ ____ ___ | \ | | | `__'| \ / || | | \ | .-. | .' `| | .-. |-/| \/ || ___| | . \ | |_| | | i | | |_| /"":| || | | | \ \ | / | .^. | | /::::| || |__. | | \ \ | ----' | | | | | \ :: | || __| | | | ) | | .' ''' `.| |\ \ | i i j| | . | / / | | | _ || | \ \ | |\/| || |__. | |. / . [| | | | | || | \ \ | | | || | | / ]. ] `--' :--' `--::--' \_|`--' ::--"|____|-"-- / :[ | __ ::-'''`.:' "--. .----::.----:: ,.---._ :| [ .-"" "`' \ / " `' `-. :]. ]:.' \/ `.:[ |/ \| ParmEd: a Parameter file Editor ['../../../../../scripts/parmed_dacP_dinuc.in'] Reading actions from ../../../../../scripts/parmed_dacP_dinuc.in Adding prmtop tmp.topo to parm list. tmp.topo is the active parm. Changing :2@OP1 Lennard-Jones well depth from 0.2100 to 0.2100 (kal/mol) and radius from 1.6612 to 1.7493 (Angstroms) Changing :2@OP2 Lennard-Jones well depth from 0.2100 to 0.2100 (kal/mol) and radius from 1.7493 to 1.7493 (Angstroms) Changing :2@O5' Lennard-Jones well depth from 0.1700 to 0.1700 (kal/mol) and radius from 1.6837 to 1.7718 (Angstroms) Changing :1@O3' Lennard-Jones well depth from 0.1700 to 0.1700 (kal/mol) and radius from 1.7718 to 1.7718 (Angstroms) Making atoms @O4' into a new LJ atom type Outputting Amber topology file full.topo.hmr Done!