CPPTRAJ: Trajectory Analysis. V16.00b
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| Date/time: 05/31/16 15:22:02
| Available memory: 2.996 GB

INPUT: Reading input from 'pt-analysis1.in'
  [parm ../../../tip3p/ff12sb/run1/build/noWAt.topo.hmr]
	Reading '../../../tip3p/ff12sb/run1/build/noWAt.topo.hmr' as Amber Topology
  [trajin ../ctraj.c5]
	Reading '../ctraj.c5' as Amber NetCDF
  [reference ../../../A-form.pdb [a-form]]
	Reading '../../../A-form.pdb' as PDB
	Setting active reference for distance-based masks: 'A-form.pdb'
  [rmsd rms_2_aform :1,2&!@H= ref [a-form] mass]
    RMSD: (:1,2&!@H*), reference is "[a-form]:1" (:1,2&!@H*), mass-weighted.
	Best-fit RMSD will be calculated, coords will be rotated and translated.
  [distance dist_sugar_ox :1@O2' :2@O4']
    DISTANCE: :1@O2' to :2@O4', center of mass.
  [distance dist_N3-O5p :1@N3 :1@O5']
    DISTANCE: :1@N3 to :1@O5', center of mass.
  [distance COM :2@N1,C2,H2,N3,C4,C5,C6,N2,H21,H22,N7,C8,H8,N9,O6 :1@N1,C6,H6,C5,H5,C4,O4,N3,H3,C2,O2]
    DISTANCE: :2@N1,C2,H2,N3,C4,C5,C6,N2,H21,H22,N7,C8,H8,N9,O6 to :1@N1,C6,H6,C5,H5,C4,O4,N3,H3,C2,O2, center of mass.
  [dihedral g1 :1@O5' :1@C5' :1@C4' :1@C3' type gamma]
    DIHEDRAL: [:1@O5']-[:1@C5']-[:1@C4']-[:1@C3']
              Output range is -180 to 180 degrees.
  [dihedral d1 :1@C5' :1@C4' :1@C3' :1@O3' type delta]
    DIHEDRAL: [:1@C5']-[:1@C4']-[:1@C3']-[:1@O3']
              Output range is -180 to 180 degrees.
  [dihedral e1 :1@C4' :1@C3' :1@O3' :2@P type epsilon]
    DIHEDRAL: [:1@C4']-[:1@C3']-[:1@O3']-[:2@P]
              Output range is -180 to 180 degrees.
  [dihedral z1 :1@C3' :1@O3' :2@P :2@O5' type zeta]
    DIHEDRAL: [:1@C3']-[:1@O3']-[:2@P]-[:2@O5']
              Output range is -180 to 180 degrees.
  [dihedral c1 :1@O4' :1@C1' :1@N1 :1@C2 type chi]
    DIHEDRAL: [:1@O4']-[:1@C1']-[:1@N1]-[:1@C2]
              Output range is -180 to 180 degrees.
  [dihedral a2 :1@O3' :2@P :2@O5' :2@C5' type alpha]
    DIHEDRAL: [:1@O3']-[:2@P]-[:2@O5']-[:2@C5']
              Output range is -180 to 180 degrees.
  [dihedral b2 :2@P :2@O5' :2@C5' :2@C4' type beta]
    DIHEDRAL: [:2@P]-[:2@O5']-[:2@C5']-[:2@C4']
              Output range is -180 to 180 degrees.
  [dihedral g2 :2@O5' :2@C5' :2@C4' :2@C3' type gamma]
    DIHEDRAL: [:2@O5']-[:2@C5']-[:2@C4']-[:2@C3']
              Output range is -180 to 180 degrees.
  [dihedral d2 :2@C5' :2@C4' :2@C3' :2@O3' type delta]
    DIHEDRAL: [:2@C5']-[:2@C4']-[:2@C3']-[:2@O3']
              Output range is -180 to 180 degrees.
  [dihedral c2 :2@O4' :2@C1' :2@N9 :2@C4 type chi]
    DIHEDRAL: [:2@O4']-[:2@C1']-[:2@N9]-[:2@C4]
              Output range is -180 to 180 degrees.
  [run]
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES (1 total):
 0: noWAt.topo.hmr, 63 atoms, 2 res, box: Orthogonal, 1 mol

INPUT TRAJECTORIES (1 total):
 0: 'ctraj.c5' is a NetCDF AMBER trajectory, Parm noWAt.topo.hmr (Orthogonal box) (reading 3175 of 3175)
  Coordinate processing will occur on 3175 frames.

REFERENCE FRAMES (1 total):
    0: [a-form]:1
	Active reference frame for distance-based masks is '[a-form]:1'

BEGIN TRAJECTORY PROCESSING:
.....................................................
ACTION SETUP FOR PARM 'noWAt.topo.hmr' (14 actions):
  0: [rmsd rms_2_aform :1,2&!@H= ref [a-form] mass]
	Target mask: [:1,2&!@H*](40)
	Reference mask: [:1,2&!@H*](40)
Warning: Coordinates are being rotated and box coordinates are present.
Warning: Unit cell vectors are NOT rotated; imaging will not be possible
Warning:  after the RMS-fit is performed.
  1: [distance dist_sugar_ox :1@O2' :2@O4']
	:1@O2' (1 atoms) to :2@O4' (1 atoms), imaged.
  2: [distance dist_N3-O5p :1@N3 :1@O5']
	:1@N3 (1 atoms) to :1@O5' (1 atoms), imaged.
  3: [distance COM :2@N1,C2,H2,N3,C4,C5,C6,N2,H21,H22,N7,C8,H8,N9,O6 :1@N1,C6,H6,C5,H5,C4,O4,N3,H3,C2,O2]
	:2@N1,C2,H2,N3,C4,C5,C6,N2,H21,H22,N7,C8,H8,N9,O6 (14 atoms) to :1@N1,C6,H6,C5,H5,C4,O4,N3,H3,C2,O2 (11 atoms), imaged.
  4: [dihedral g1 :1@O5' :1@C5' :1@C4' :1@C3' type gamma]
	 [:1@O5'](1) [:1@C5'](1) [:1@C4'](1) [:1@C3'](1)
  5: [dihedral d1 :1@C5' :1@C4' :1@C3' :1@O3' type delta]
	 [:1@C5'](1) [:1@C4'](1) [:1@C3'](1) [:1@O3'](1)
  6: [dihedral e1 :1@C4' :1@C3' :1@O3' :2@P type epsilon]
	 [:1@C4'](1) [:1@C3'](1) [:1@O3'](1) [:2@P](1)
  7: [dihedral z1 :1@C3' :1@O3' :2@P :2@O5' type zeta]
	 [:1@C3'](1) [:1@O3'](1) [:2@P](1) [:2@O5'](1)
  8: [dihedral c1 :1@O4' :1@C1' :1@N1 :1@C2 type chi]
	 [:1@O4'](1) [:1@C1'](1) [:1@N1](1) [:1@C2](1)
  9: [dihedral a2 :1@O3' :2@P :2@O5' :2@C5' type alpha]
	 [:1@O3'](1) [:2@P](1) [:2@O5'](1) [:2@C5'](1)
  10: [dihedral b2 :2@P :2@O5' :2@C5' :2@C4' type beta]
	 [:2@P](1) [:2@O5'](1) [:2@C5'](1) [:2@C4'](1)
  11: [dihedral g2 :2@O5' :2@C5' :2@C4' :2@C3' type gamma]
	 [:2@O5'](1) [:2@C5'](1) [:2@C4'](1) [:2@C3'](1)
  12: [dihedral d2 :2@C5' :2@C4' :2@C3' :2@O3' type delta]
	 [:2@C5'](1) [:2@C4'](1) [:2@C3'](1) [:2@O3'](1)
  13: [dihedral c2 :2@O4' :2@C1' :2@N9 :2@C4 type chi]
	 [:2@O4'](1) [:2@C1'](1) [:2@N9](1) [:2@C4](1)
----- ctraj.c5 (1-3175, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 3175 frames and processed 3175 frames.
TIME: Avg. throughput= 193845.7781 frames / second.

ACTION OUTPUT:

DATASETS (14 total):
	rms_2_aform "rms_2_aform" (double, rms), size is 3175
	dist_sugar_ox "dist_sugar_ox" (double, distance), size is 3175
	dist_N3-O5p "dist_N3-O5p" (double, distance), size is 3175
	COM "COM" (double, distance), size is 3175
	g1 "g1" (double, torsion(gamma)), size is 3175
	d1 "d1" (double, torsion(delta)), size is 3175
	e1 "e1" (double, torsion(epsilon)), size is 3175
	z1 "z1" (double, torsion(zeta)), size is 3175
	c1 "c1" (double, torsion(chin)), size is 3175
	a2 "a2" (double, torsion(alpha)), size is 3175
	b2 "b2" (double, torsion(beta)), size is 3175
	g2 "g2" (double, torsion(gamma)), size is 3175
	d2 "d2" (double, torsion(delta)), size is 3175
	c2 "c2" (double, torsion(chin)), size is 3175

RUN TIMING:
TIME:		Init               : 0.0000 s (  0.19%)
TIME:		Trajectory Process : 0.0164 s ( 99.58%)
TIME:		Action Post        : 0.0000 s (  0.01%)
TIME:		Analysis           : 0.0000 s (  0.00%)
TIME:		Data File Write    : 0.0000 s (  0.12%)
TIME:		Other              : 0.0000 s (  0.00%)
TIME:	Run Total 0.0164 s
---------- RUN END ---------------------------------------------------
  [avg rms_2_aform out avg-rmsd-all.dat]
    AVERAGE: Calculating average of 1 data sets.
	Data set base name 'AVERAGE_00016'
	Output to to 'avg-rmsd-all.dat'
  [hist rms_2_aform,0,5,0.1 out rmsd-hist.dat name RMSD norm]
	Hist: rmsd-hist.dat: Set up for 1 dimensions using the following datasets:
	[ rms_2_aform ]
	norm: Sum over bins will be normalized to 1.0.
  [hist COM,0,10,0.1 out COM-hist.dat name CoM norm]
	Hist: COM-hist.dat: Set up for 1 dimensions using the following datasets:
	[ COM ]
	norm: Sum over bins will be normalized to 1.0.
  [hist dist_sugar_ox,0,10,0.1 out distO2O4-hist.dat norm]
	Hist: distO2O4-hist.dat: Set up for 1 dimensions using the following datasets:
	[ dist_sugar_ox ]
	norm: Sum over bins will be normalized to 1.0.
  [hist dist_N3-O5p,0,10,0.1 out distN3-O5p-hist.dat norm]
	Hist: distN3-O5p-hist.dat: Set up for 1 dimensions using the following datasets:
	[ dist_N3-O5p ]
	norm: Sum over bins will be normalized to 1.0.
  [hist rms_2_aform,0,5,0.1 dist_sugar_ox,0,10,0.1 out 2dhist_rms-dist.gnu norm]
	Hist: 2dhist_rms-dist.gnu: Set up for 2 dimensions using the following datasets:
	[ rms_2_aform dist_sugar_ox ]
	norm: Sum over bins will be normalized to 1.0.
  [hist g1,-180,180,1 out dihed_g1-hist.dat name gamma_1 norm]
	Hist: dihed_g1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ g1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist d1,-180,180,1 out dihed_d1-hist.dat name delta_1 norm]
	Hist: dihed_d1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ d1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist e1,-180,180,1 out dihed_e1-hist.dat name epsilon_1 norm]
	Hist: dihed_e1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ e1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist z1,-180,180,1 out dihed_z1-hist.dat name zeta_1 norm]
	Hist: dihed_z1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ z1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist c1,-180,180,1 out dihed_c1-hist.dat name chi_1 norm]
	Hist: dihed_c1-hist.dat: Set up for 1 dimensions using the following datasets:
	[ c1 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist a2,-180,180,1 out dihed_a2-hist.dat name alpha_2 norm]
	Hist: dihed_a2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ a2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist b2,-180,180,1 out dihed_b2-hist.dat name beta_2 norm]
	Hist: dihed_b2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ b2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist g2,-180,180,1 out dihed_g2-hist.dat name gamma_2 norm]
	Hist: dihed_g2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ g2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist d2,-180,180,1 out dihed_d2-hist.dat name delta_2 norm]
	Hist: dihed_d2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ d2 ]
	norm: Sum over bins will be normalized to 1.0.
  [hist c2,-180,180,1 out dihed_c2-hist.dat name chi_2 norm]
	Hist: dihed_c2-hist.dat: Set up for 1 dimensions using the following datasets:
	[ c2 ]
	norm: Sum over bins will be normalized to 1.0.
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES (1 total):
 0: noWAt.topo.hmr, 63 atoms, 2 res, box: Orthogonal, 1 mol

INPUT TRAJECTORIES (1 total):
 0: 'ctraj.c5' is a NetCDF AMBER trajectory, Parm noWAt.topo.hmr (Orthogonal box) (reading 3175 of 3175)
  Coordinate processing will occur on 3175 frames.

REFERENCE FRAMES (1 total):
    0: [a-form]:1
	Active reference frame for distance-based masks is '[a-form]:1'

BEGIN TRAJECTORY PROCESSING:
----- ctraj.c5 (1-3175, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 3175 frames and processed 3175 frames.
TIME: Avg. throughput= 741475.9458 frames / second.

ACTION OUTPUT:

ANALYSIS: Performing 16 analyses:
  0: [avg rms_2_aform out avg-rmsd-all.dat]
	1: rms_2_aform
  1: [hist rms_2_aform,0,5,0.1 out rmsd-hist.dat name RMSD norm]
		Calculating bins from min=0 max=5 step=0.1.
	Dim rms_2_aform: 0.000000->5.000000, step 0.100000, 50 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 50
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  2: [hist COM,0,10,0.1 out COM-hist.dat name CoM norm]
		Calculating bins from min=0 max=10 step=0.1.
	Dim COM: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Warning: Frame 1 Coordinates out of bounds (-1)
	Warning: Frame 2 Coordinates out of bounds (-1)
	Warning: Frame 3 Coordinates out of bounds (-1)
	Warning: Frame 4 Coordinates out of bounds (-1)
	Warning: Frame 11 Coordinates out of bounds (-1)
	Warning: Frame 13 Coordinates out of bounds (-1)
	Warning: Frame 16 Coordinates out of bounds (-1)
	Warning: Frame 17 Coordinates out of bounds (-1)
	Warning: Frame 23 Coordinates out of bounds (-1)
	Warning: Frame 24 Coordinates out of bounds (-1)
	Warning: Frame 25 Coordinates out of bounds (-1)
	Warning: Frame 26 Coordinates out of bounds (-1)
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	Warning: Frame 32 Coordinates out of bounds (-1)
	Warning: Frame 33 Coordinates out of bounds (-1)
	Warning: Frame 35 Coordinates out of bounds (-1)
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	Warning: Frame 2042 Coordinates out of bounds (-1)
	Warning: Frame 2043 Coordinates out of bounds (-1)
	Warning: Frame 2045 Coordinates out of bounds (-1)
	Warning: Frame 2047 Coordinates out of bounds (-1)
	Warning: Frame 2048 Coordinates out of bounds (-1)
	Warning: Frame 2050 Coordinates out of bounds (-1)
	Warning: Frame 2054 Coordinates out of bounds (-1)
	Warning: Frame 2061 Coordinates out of bounds (-1)
	Warning: Frame 2065 Coordinates out of bounds (-1)
	Warning: Frame 2066 Coordinates out of bounds (-1)
	Warning: Frame 2067 Coordinates out of bounds (-1)
	Warning: Frame 2071 Coordinates out of bounds (-1)
	Warning: Frame 2073 Coordinates out of bounds (-1)
	Warning: Frame 2074 Coordinates out of bounds (-1)
	Warning: Frame 2076 Coordinates out of bounds (-1)
	Warning: Frame 2077 Coordinates out of bounds (-1)
	Warning: Frame 2078 Coordinates out of bounds (-1)
	Warning: Frame 2079 Coordinates out of bounds (-1)
	Warning: Frame 2080 Coordinates out of bounds (-1)
	Warning: Frame 2084 Coordinates out of bounds (-1)
	Warning: Frame 2085 Coordinates out of bounds (-1)
	Warning: Frame 2086 Coordinates out of bounds (-1)
	Warning: Frame 2089 Coordinates out of bounds (-1)
	Warning: Frame 2095 Coordinates out of bounds (-1)
	Warning: Frame 2096 Coordinates out of bounds (-1)
	Warning: Frame 2097 Coordinates out of bounds (-1)
	Warning: Frame 2106 Coordinates out of bounds (-1)
	Warning: Frame 2125 Coordinates out of bounds (-1)
	Warning: Frame 2126 Coordinates out of bounds (-1)
	Warning: Frame 2130 Coordinates out of bounds (-1)
	Warning: Frame 2131 Coordinates out of bounds (-1)
	Warning: Frame 2132 Coordinates out of bounds (-1)
	Warning: Frame 2133 Coordinates out of bounds (-1)
	Warning: Frame 2134 Coordinates out of bounds (-1)
	Warning: Frame 2135 Coordinates out of bounds (-1)
	Warning: Frame 2143 Coordinates out of bounds (-1)
	Warning: Frame 2144 Coordinates out of bounds (-1)
	Warning: Frame 2150 Coordinates out of bounds (-1)
	Warning: Frame 2152 Coordinates out of bounds (-1)
	Warning: Frame 2153 Coordinates out of bounds (-1)
	Warning: Frame 2154 Coordinates out of bounds (-1)
	Warning: Frame 2158 Coordinates out of bounds (-1)
	Warning: Frame 2159 Coordinates out of bounds (-1)
	Warning: Frame 2160 Coordinates out of bounds (-1)
	Warning: Frame 2161 Coordinates out of bounds (-1)
	Warning: Frame 2163 Coordinates out of bounds (-1)
	Warning: Frame 2165 Coordinates out of bounds (-1)
	Warning: Frame 2166 Coordinates out of bounds (-1)
	Warning: Frame 2167 Coordinates out of bounds (-1)
	Warning: Frame 2172 Coordinates out of bounds (-1)
	Warning: Frame 2173 Coordinates out of bounds (-1)
	Warning: Frame 2176 Coordinates out of bounds (-1)
	Warning: Frame 2178 Coordinates out of bounds (-1)
	Warning: Frame 2184 Coordinates out of bounds (-1)
	Warning: Frame 2187 Coordinates out of bounds (-1)
	Warning: Frame 2189 Coordinates out of bounds (-1)
	Warning: Frame 2192 Coordinates out of bounds (-1)
	Warning: Frame 2193 Coordinates out of bounds (-1)
	Warning: Frame 2194 Coordinates out of bounds (-1)
	Warning: Frame 2195 Coordinates out of bounds (-1)
	Warning: Frame 2197 Coordinates out of bounds (-1)
	Warning: Frame 2207 Coordinates out of bounds (-1)
	Warning: Frame 2212 Coordinates out of bounds (-1)
	Warning: Frame 2217 Coordinates out of bounds (-1)
	Warning: Frame 2218 Coordinates out of bounds (-1)
	Warning: Frame 2219 Coordinates out of bounds (-1)
	Warning: Frame 2229 Coordinates out of bounds (-1)
	Warning: Frame 2234 Coordinates out of bounds (-1)
	Warning: Frame 2235 Coordinates out of bounds (-1)
	Warning: Frame 2241 Coordinates out of bounds (-1)
	Warning: Frame 2242 Coordinates out of bounds (-1)
	Warning: Frame 2244 Coordinates out of bounds (-1)
	Warning: Frame 2245 Coordinates out of bounds (-1)
	Warning: Frame 2248 Coordinates out of bounds (-1)
	Warning: Frame 2249 Coordinates out of bounds (-1)
	Warning: Frame 2252 Coordinates out of bounds (-1)
	Warning: Frame 2263 Coordinates out of bounds (-1)
	Warning: Frame 2270 Coordinates out of bounds (-1)
	Warning: Frame 2271 Coordinates out of bounds (-1)
	Warning: Frame 2272 Coordinates out of bounds (-1)
	Warning: Frame 2275 Coordinates out of bounds (-1)
	Warning: Frame 2278 Coordinates out of bounds (-1)
	Warning: Frame 2279 Coordinates out of bounds (-1)
	Warning: Frame 2281 Coordinates out of bounds (-1)
	Warning: Frame 2282 Coordinates out of bounds (-1)
	Warning: Frame 2283 Coordinates out of bounds (-1)
	Warning: Frame 2285 Coordinates out of bounds (-1)
	Warning: Frame 2286 Coordinates out of bounds (-1)
	Warning: Frame 2289 Coordinates out of bounds (-1)
	Warning: Frame 2290 Coordinates out of bounds (-1)
	Warning: Frame 2299 Coordinates out of bounds (-1)
	Warning: Frame 2303 Coordinates out of bounds (-1)
	Warning: Frame 2304 Coordinates out of bounds (-1)
	Warning: Frame 2305 Coordinates out of bounds (-1)
	Warning: Frame 2306 Coordinates out of bounds (-1)
	Warning: Frame 2307 Coordinates out of bounds (-1)
	Warning: Frame 2308 Coordinates out of bounds (-1)
	Warning: Frame 2313 Coordinates out of bounds (-1)
	Warning: Frame 2314 Coordinates out of bounds (-1)
	Warning: Frame 2315 Coordinates out of bounds (-1)
	Warning: Frame 2319 Coordinates out of bounds (-1)
	Warning: Frame 2320 Coordinates out of bounds (-1)
	Warning: Frame 2324 Coordinates out of bounds (-1)
	Warning: Frame 2326 Coordinates out of bounds (-1)
	Warning: Frame 2327 Coordinates out of bounds (-1)
	Warning: Frame 2328 Coordinates out of bounds (-1)
	Warning: Frame 2329 Coordinates out of bounds (-1)
	Warning: Frame 2330 Coordinates out of bounds (-1)
	Warning: Frame 2335 Coordinates out of bounds (-1)
	Warning: Frame 2342 Coordinates out of bounds (-1)
	Warning: Frame 2343 Coordinates out of bounds (-1)
	Warning: Frame 2344 Coordinates out of bounds (-1)
	Warning: Frame 2346 Coordinates out of bounds (-1)
	Warning: Frame 2348 Coordinates out of bounds (-1)
	Warning: Frame 2355 Coordinates out of bounds (-1)
	Warning: Frame 2356 Coordinates out of bounds (-1)
	Warning: Frame 2358 Coordinates out of bounds (-1)
	Warning: Frame 2360 Coordinates out of bounds (-1)
	Warning: Frame 2363 Coordinates out of bounds (-1)
	Warning: Frame 2364 Coordinates out of bounds (-1)
	Warning: Frame 2365 Coordinates out of bounds (-1)
	Warning: Frame 2366 Coordinates out of bounds (-1)
	Warning: Frame 2367 Coordinates out of bounds (-1)
	Warning: Frame 2368 Coordinates out of bounds (-1)
	Warning: Frame 2371 Coordinates out of bounds (-1)
	Warning: Frame 2372 Coordinates out of bounds (-1)
	Warning: Frame 2378 Coordinates out of bounds (-1)
	Warning: Frame 2379 Coordinates out of bounds (-1)
	Warning: Frame 2380 Coordinates out of bounds (-1)
	Warning: Frame 2381 Coordinates out of bounds (-1)
	Warning: Frame 2390 Coordinates out of bounds (-1)
	Warning: Frame 2401 Coordinates out of bounds (-1)
	Warning: Frame 2403 Coordinates out of bounds (-1)
	Warning: Frame 2408 Coordinates out of bounds (-1)
	Warning: Frame 2409 Coordinates out of bounds (-1)
	Warning: Frame 2410 Coordinates out of bounds (-1)
	Warning: Frame 2416 Coordinates out of bounds (-1)
	Warning: Frame 2420 Coordinates out of bounds (-1)
	Warning: Frame 2426 Coordinates out of bounds (-1)
	Warning: Frame 2427 Coordinates out of bounds (-1)
	Warning: Frame 2431 Coordinates out of bounds (-1)
	Warning: Frame 2437 Coordinates out of bounds (-1)
	Warning: Frame 2439 Coordinates out of bounds (-1)
	Warning: Frame 2441 Coordinates out of bounds (-1)
	Warning: Frame 2446 Coordinates out of bounds (-1)
	Warning: Frame 2448 Coordinates out of bounds (-1)
	Warning: Frame 2449 Coordinates out of bounds (-1)
	Warning: Frame 2450 Coordinates out of bounds (-1)
	Warning: Frame 2451 Coordinates out of bounds (-1)
	Warning: Frame 2453 Coordinates out of bounds (-1)
	Warning: Frame 2454 Coordinates out of bounds (-1)
	Warning: Frame 2455 Coordinates out of bounds (-1)
	Warning: Frame 2456 Coordinates out of bounds (-1)
	Warning: Frame 2457 Coordinates out of bounds (-1)
	Warning: Frame 2459 Coordinates out of bounds (-1)
	Warning: Frame 2460 Coordinates out of bounds (-1)
	Warning: Frame 2461 Coordinates out of bounds (-1)
	Warning: Frame 2462 Coordinates out of bounds (-1)
	Warning: Frame 2463 Coordinates out of bounds (-1)
	Warning: Frame 2467 Coordinates out of bounds (-1)
	Warning: Frame 2471 Coordinates out of bounds (-1)
	Warning: Frame 2480 Coordinates out of bounds (-1)
	Warning: Frame 2481 Coordinates out of bounds (-1)
	Warning: Frame 2482 Coordinates out of bounds (-1)
	Warning: Frame 2483 Coordinates out of bounds (-1)
	Warning: Frame 2484 Coordinates out of bounds (-1)
	Warning: Frame 2486 Coordinates out of bounds (-1)
	Warning: Frame 2493 Coordinates out of bounds (-1)
	Warning: Frame 2494 Coordinates out of bounds (-1)
	Warning: Frame 2495 Coordinates out of bounds (-1)
	Warning: Frame 2497 Coordinates out of bounds (-1)
	Warning: Frame 2498 Coordinates out of bounds (-1)
	Warning: Frame 2501 Coordinates out of bounds (-1)
	Warning: Frame 2502 Coordinates out of bounds (-1)
	Warning: Frame 2503 Coordinates out of bounds (-1)
	Warning: Frame 2504 Coordinates out of bounds (-1)
	Warning: Frame 2505 Coordinates out of bounds (-1)
	Warning: Frame 2512 Coordinates out of bounds (-1)
	Warning: Frame 2513 Coordinates out of bounds (-1)
	Warning: Frame 2514 Coordinates out of bounds (-1)
	Warning: Frame 2519 Coordinates out of bounds (-1)
	Warning: Frame 2520 Coordinates out of bounds (-1)
	Warning: Frame 2524 Coordinates out of bounds (-1)
	Warning: Frame 2525 Coordinates out of bounds (-1)
	Warning: Frame 2526 Coordinates out of bounds (-1)
	Warning: Frame 2527 Coordinates out of bounds (-1)
	Warning: Frame 2528 Coordinates out of bounds (-1)
	Warning: Frame 2532 Coordinates out of bounds (-1)
	Warning: Frame 2533 Coordinates out of bounds (-1)
	Warning: Frame 2534 Coordinates out of bounds (-1)
	Warning: Frame 2535 Coordinates out of bounds (-1)
	Warning: Frame 2536 Coordinates out of bounds (-1)
	Warning: Frame 2537 Coordinates out of bounds (-1)
	Warning: Frame 2538 Coordinates out of bounds (-1)
	Warning: Frame 2539 Coordinates out of bounds (-1)
	Warning: Frame 2540 Coordinates out of bounds (-1)
	Warning: Frame 2543 Coordinates out of bounds (-1)
	Warning: Frame 2544 Coordinates out of bounds (-1)
	Warning: Frame 2546 Coordinates out of bounds (-1)
	Warning: Frame 2547 Coordinates out of bounds (-1)
	Warning: Frame 2549 Coordinates out of bounds (-1)
	Warning: Frame 2550 Coordinates out of bounds (-1)
	Warning: Frame 2551 Coordinates out of bounds (-1)
	Warning: Frame 2552 Coordinates out of bounds (-1)
	Warning: Frame 2553 Coordinates out of bounds (-1)
	Warning: Frame 2555 Coordinates out of bounds (-1)
	Warning: Frame 2561 Coordinates out of bounds (-1)
	Warning: Frame 2562 Coordinates out of bounds (-1)
	Warning: Frame 2564 Coordinates out of bounds (-1)
	Warning: Frame 2568 Coordinates out of bounds (-1)
	Warning: Frame 2569 Coordinates out of bounds (-1)
	Warning: Frame 2571 Coordinates out of bounds (-1)
	Warning: Frame 2572 Coordinates out of bounds (-1)
	Warning: Frame 2574 Coordinates out of bounds (-1)
	Warning: Frame 2575 Coordinates out of bounds (-1)
	Warning: Frame 2577 Coordinates out of bounds (-1)
	Warning: Frame 2578 Coordinates out of bounds (-1)
	Warning: Frame 2583 Coordinates out of bounds (-1)
	Warning: Frame 2584 Coordinates out of bounds (-1)
	Warning: Frame 2593 Coordinates out of bounds (-1)
	Warning: Frame 2596 Coordinates out of bounds (-1)
	Warning: Frame 2597 Coordinates out of bounds (-1)
	Warning: Frame 2598 Coordinates out of bounds (-1)
	Warning: Frame 2601 Coordinates out of bounds (-1)
	Warning: Frame 2604 Coordinates out of bounds (-1)
	Warning: Frame 2605 Coordinates out of bounds (-1)
	Warning: Frame 2606 Coordinates out of bounds (-1)
	Warning: Frame 2607 Coordinates out of bounds (-1)
	Warning: Frame 2608 Coordinates out of bounds (-1)
	Warning: Frame 2613 Coordinates out of bounds (-1)
	Warning: Frame 2614 Coordinates out of bounds (-1)
	Warning: Frame 2617 Coordinates out of bounds (-1)
	Warning: Frame 2618 Coordinates out of bounds (-1)
	Warning: Frame 2620 Coordinates out of bounds (-1)
	Warning: Frame 2621 Coordinates out of bounds (-1)
	Warning: Frame 2622 Coordinates out of bounds (-1)
	Warning: Frame 2625 Coordinates out of bounds (-1)
	Warning: Frame 2626 Coordinates out of bounds (-1)
	Warning: Frame 2627 Coordinates out of bounds (-1)
	Warning: Frame 2631 Coordinates out of bounds (-1)
	Warning: Frame 2632 Coordinates out of bounds (-1)
	Warning: Frame 2635 Coordinates out of bounds (-1)
	Warning: Frame 2637 Coordinates out of bounds (-1)
	Warning: Frame 2638 Coordinates out of bounds (-1)
	Warning: Frame 2639 Coordinates out of bounds (-1)
	Warning: Frame 2641 Coordinates out of bounds (-1)
	Warning: Frame 2642 Coordinates out of bounds (-1)
	Warning: Frame 2646 Coordinates out of bounds (-1)
	Warning: Frame 2648 Coordinates out of bounds (-1)
	Warning: Frame 2650 Coordinates out of bounds (-1)
	Warning: Frame 2651 Coordinates out of bounds (-1)
	Warning: Frame 2653 Coordinates out of bounds (-1)
	Warning: Frame 2655 Coordinates out of bounds (-1)
	Warning: Frame 2666 Coordinates out of bounds (-1)
	Warning: Frame 2669 Coordinates out of bounds (-1)
	Warning: Frame 2670 Coordinates out of bounds (-1)
	Warning: Frame 2671 Coordinates out of bounds (-1)
	Warning: Frame 2676 Coordinates out of bounds (-1)
	Warning: Frame 2677 Coordinates out of bounds (-1)
	Warning: Frame 2678 Coordinates out of bounds (-1)
	Warning: Frame 2680 Coordinates out of bounds (-1)
	Warning: Frame 2681 Coordinates out of bounds (-1)
	Warning: Frame 2683 Coordinates out of bounds (-1)
	Warning: Frame 2690 Coordinates out of bounds (-1)
	Warning: Frame 2692 Coordinates out of bounds (-1)
	Warning: Frame 2694 Coordinates out of bounds (-1)
	Warning: Frame 2695 Coordinates out of bounds (-1)
	Warning: Frame 2698 Coordinates out of bounds (-1)
	Warning: Frame 2707 Coordinates out of bounds (-1)
	Warning: Frame 2709 Coordinates out of bounds (-1)
	Warning: Frame 2712 Coordinates out of bounds (-1)
	Warning: Frame 2713 Coordinates out of bounds (-1)
	Warning: Frame 2715 Coordinates out of bounds (-1)
	Warning: Frame 2723 Coordinates out of bounds (-1)
	Warning: Frame 2725 Coordinates out of bounds (-1)
	Warning: Frame 2726 Coordinates out of bounds (-1)
	Warning: Frame 2728 Coordinates out of bounds (-1)
	Warning: Frame 2732 Coordinates out of bounds (-1)
	Warning: Frame 2734 Coordinates out of bounds (-1)
	Warning: Frame 2739 Coordinates out of bounds (-1)
	Warning: Frame 2742 Coordinates out of bounds (-1)
	Warning: Frame 2745 Coordinates out of bounds (-1)
	Warning: Frame 2746 Coordinates out of bounds (-1)
	Warning: Frame 2747 Coordinates out of bounds (-1)
	Warning: Frame 2748 Coordinates out of bounds (-1)
	Warning: Frame 2749 Coordinates out of bounds (-1)
	Warning: Frame 2751 Coordinates out of bounds (-1)
	Warning: Frame 2753 Coordinates out of bounds (-1)
	Warning: Frame 2754 Coordinates out of bounds (-1)
	Warning: Frame 2756 Coordinates out of bounds (-1)
	Warning: Frame 2767 Coordinates out of bounds (-1)
	Warning: Frame 2771 Coordinates out of bounds (-1)
	Warning: Frame 2772 Coordinates out of bounds (-1)
	Warning: Frame 2774 Coordinates out of bounds (-1)
	Warning: Frame 2775 Coordinates out of bounds (-1)
	Warning: Frame 2776 Coordinates out of bounds (-1)
	Warning: Frame 2779 Coordinates out of bounds (-1)
	Warning: Frame 2782 Coordinates out of bounds (-1)
	Warning: Frame 2783 Coordinates out of bounds (-1)
	Warning: Frame 2784 Coordinates out of bounds (-1)
	Warning: Frame 2785 Coordinates out of bounds (-1)
	Warning: Frame 2786 Coordinates out of bounds (-1)
	Warning: Frame 2787 Coordinates out of bounds (-1)
	Warning: Frame 2788 Coordinates out of bounds (-1)
	Warning: Frame 2789 Coordinates out of bounds (-1)
	Warning: Frame 2790 Coordinates out of bounds (-1)
	Warning: Frame 2792 Coordinates out of bounds (-1)
	Warning: Frame 2793 Coordinates out of bounds (-1)
	Warning: Frame 2796 Coordinates out of bounds (-1)
	Warning: Frame 2797 Coordinates out of bounds (-1)
	Warning: Frame 2798 Coordinates out of bounds (-1)
	Warning: Frame 2801 Coordinates out of bounds (-1)
	Warning: Frame 2803 Coordinates out of bounds (-1)
	Warning: Frame 2804 Coordinates out of bounds (-1)
	Warning: Frame 2805 Coordinates out of bounds (-1)
	Warning: Frame 2806 Coordinates out of bounds (-1)
	Warning: Frame 2808 Coordinates out of bounds (-1)
	Warning: Frame 2809 Coordinates out of bounds (-1)
	Warning: Frame 2810 Coordinates out of bounds (-1)
	Warning: Frame 2813 Coordinates out of bounds (-1)
	Warning: Frame 2821 Coordinates out of bounds (-1)
	Warning: Frame 2827 Coordinates out of bounds (-1)
	Warning: Frame 2828 Coordinates out of bounds (-1)
	Warning: Frame 2832 Coordinates out of bounds (-1)
	Warning: Frame 2848 Coordinates out of bounds (-1)
	Warning: Frame 2849 Coordinates out of bounds (-1)
	Warning: Frame 2850 Coordinates out of bounds (-1)
	Warning: Frame 2857 Coordinates out of bounds (-1)
	Warning: Frame 2859 Coordinates out of bounds (-1)
	Warning: Frame 2861 Coordinates out of bounds (-1)
	Warning: Frame 2862 Coordinates out of bounds (-1)
	Warning: Frame 2863 Coordinates out of bounds (-1)
	Warning: Frame 2866 Coordinates out of bounds (-1)
	Warning: Frame 2869 Coordinates out of bounds (-1)
	Warning: Frame 2871 Coordinates out of bounds (-1)
	Warning: Frame 2872 Coordinates out of bounds (-1)
	Warning: Frame 2874 Coordinates out of bounds (-1)
	Warning: Frame 2875 Coordinates out of bounds (-1)
	Warning: Frame 2876 Coordinates out of bounds (-1)
	Warning: Frame 2877 Coordinates out of bounds (-1)
	Warning: Frame 2878 Coordinates out of bounds (-1)
	Warning: Frame 2879 Coordinates out of bounds (-1)
	Warning: Frame 2881 Coordinates out of bounds (-1)
	Warning: Frame 2882 Coordinates out of bounds (-1)
	Warning: Frame 2884 Coordinates out of bounds (-1)
	Warning: Frame 2887 Coordinates out of bounds (-1)
	Warning: Frame 2888 Coordinates out of bounds (-1)
	Warning: Frame 2889 Coordinates out of bounds (-1)
	Warning: Frame 2892 Coordinates out of bounds (-1)
	Warning: Frame 2894 Coordinates out of bounds (-1)
	Warning: Frame 2897 Coordinates out of bounds (-1)
	Warning: Frame 2898 Coordinates out of bounds (-1)
	Warning: Frame 2908 Coordinates out of bounds (-1)
	Warning: Frame 2911 Coordinates out of bounds (-1)
	Warning: Frame 2912 Coordinates out of bounds (-1)
	Warning: Frame 2914 Coordinates out of bounds (-1)
	Warning: Frame 2915 Coordinates out of bounds (-1)
	Warning: Frame 2917 Coordinates out of bounds (-1)
	Warning: Frame 2924 Coordinates out of bounds (-1)
	Warning: Frame 2926 Coordinates out of bounds (-1)
	Warning: Frame 2927 Coordinates out of bounds (-1)
	Warning: Frame 2930 Coordinates out of bounds (-1)
	Warning: Frame 2935 Coordinates out of bounds (-1)
	Warning: Frame 2941 Coordinates out of bounds (-1)
	Warning: Frame 2954 Coordinates out of bounds (-1)
	Warning: Frame 2976 Coordinates out of bounds (-1)
	Warning: Frame 2977 Coordinates out of bounds (-1)
	Warning: Frame 2978 Coordinates out of bounds (-1)
	Warning: Frame 2985 Coordinates out of bounds (-1)
	Warning: Frame 2986 Coordinates out of bounds (-1)
	Warning: Frame 2987 Coordinates out of bounds (-1)
	Warning: Frame 2988 Coordinates out of bounds (-1)
	Warning: Frame 2989 Coordinates out of bounds (-1)
	Warning: Frame 2991 Coordinates out of bounds (-1)
	Warning: Frame 2995 Coordinates out of bounds (-1)
	Warning: Frame 2997 Coordinates out of bounds (-1)
	Warning: Frame 3000 Coordinates out of bounds (-1)
	Warning: Frame 3001 Coordinates out of bounds (-1)
	Warning: Frame 3002 Coordinates out of bounds (-1)
	Warning: Frame 3003 Coordinates out of bounds (-1)
	Warning: Frame 3004 Coordinates out of bounds (-1)
	Warning: Frame 3005 Coordinates out of bounds (-1)
	Warning: Frame 3006 Coordinates out of bounds (-1)
	Warning: Frame 3007 Coordinates out of bounds (-1)
	Warning: Frame 3008 Coordinates out of bounds (-1)
	Warning: Frame 3011 Coordinates out of bounds (-1)
	Warning: Frame 3012 Coordinates out of bounds (-1)
	Warning: Frame 3029 Coordinates out of bounds (-1)
	Warning: Frame 3035 Coordinates out of bounds (-1)
	Warning: Frame 3037 Coordinates out of bounds (-1)
	Warning: Frame 3039 Coordinates out of bounds (-1)
	Warning: Frame 3040 Coordinates out of bounds (-1)
	Warning: Frame 3041 Coordinates out of bounds (-1)
	Warning: Frame 3042 Coordinates out of bounds (-1)
	Warning: Frame 3046 Coordinates out of bounds (-1)
	Warning: Frame 3048 Coordinates out of bounds (-1)
	Warning: Frame 3049 Coordinates out of bounds (-1)
	Warning: Frame 3050 Coordinates out of bounds (-1)
	Warning: Frame 3051 Coordinates out of bounds (-1)
	Warning: Frame 3054 Coordinates out of bounds (-1)
	Warning: Frame 3055 Coordinates out of bounds (-1)
	Warning: Frame 3056 Coordinates out of bounds (-1)
	Warning: Frame 3057 Coordinates out of bounds (-1)
	Warning: Frame 3060 Coordinates out of bounds (-1)
	Warning: Frame 3065 Coordinates out of bounds (-1)
	Warning: Frame 3066 Coordinates out of bounds (-1)
	Warning: Frame 3067 Coordinates out of bounds (-1)
	Warning: Frame 3077 Coordinates out of bounds (-1)
	Warning: Frame 3078 Coordinates out of bounds (-1)
	Warning: Frame 3080 Coordinates out of bounds (-1)
	Warning: Frame 3105 Coordinates out of bounds (-1)
	Warning: Frame 3106 Coordinates out of bounds (-1)
	Warning: Frame 3107 Coordinates out of bounds (-1)
	Warning: Frame 3108 Coordinates out of bounds (-1)
	Warning: Frame 3109 Coordinates out of bounds (-1)
	Warning: Frame 3110 Coordinates out of bounds (-1)
	Warning: Frame 3111 Coordinates out of bounds (-1)
	Warning: Frame 3112 Coordinates out of bounds (-1)
	Warning: Frame 3113 Coordinates out of bounds (-1)
	Warning: Frame 3114 Coordinates out of bounds (-1)
	Warning: Frame 3115 Coordinates out of bounds (-1)
	Warning: Frame 3116 Coordinates out of bounds (-1)
	Warning: Frame 3117 Coordinates out of bounds (-1)
	Warning: Frame 3118 Coordinates out of bounds (-1)
	Warning: Frame 3119 Coordinates out of bounds (-1)
	Warning: Frame 3125 Coordinates out of bounds (-1)
	Warning: Frame 3126 Coordinates out of bounds (-1)
	Warning: Frame 3128 Coordinates out of bounds (-1)
	Warning: Frame 3129 Coordinates out of bounds (-1)
	Warning: Frame 3130 Coordinates out of bounds (-1)
	Warning: Frame 3131 Coordinates out of bounds (-1)
	Warning: Frame 3134 Coordinates out of bounds (-1)
	Warning: Frame 3135 Coordinates out of bounds (-1)
	Warning: Frame 3136 Coordinates out of bounds (-1)
	Warning: Frame 3137 Coordinates out of bounds (-1)
	Warning: Frame 3138 Coordinates out of bounds (-1)
	Warning: Frame 3139 Coordinates out of bounds (-1)
	Warning: Frame 3140 Coordinates out of bounds (-1)
	Warning: Frame 3144 Coordinates out of bounds (-1)
	Warning: Frame 3147 Coordinates out of bounds (-1)
	Warning: Frame 3151 Coordinates out of bounds (-1)
	Warning: Frame 3152 Coordinates out of bounds (-1)
	Warning: Frame 3155 Coordinates out of bounds (-1)
	Warning: Frame 3161 Coordinates out of bounds (-1)
	Warning: Frame 3163 Coordinates out of bounds (-1)
	Warning: Frame 3168 Coordinates out of bounds (-1)
	Warning: Frame 3170 Coordinates out of bounds (-1)
	Warning: Frame 3171 Coordinates out of bounds (-1)
	Warning: Frame 3172 Coordinates out of bounds (-1)
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 2008
  3: [hist dist_sugar_ox,0,10,0.1 out distO2O4-hist.dat norm]
		Calculating bins from min=0 max=10 step=0.1.
	Dim dist_sugar_ox: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  4: [hist dist_N3-O5p,0,10,0.1 out distN3-O5p-hist.dat norm]
		Calculating bins from min=0 max=10 step=0.1.
	Dim dist_N3-O5p: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 100
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  5: [hist rms_2_aform,0,5,0.1 dist_sugar_ox,0,10,0.1 out 2dhist_rms-dist.gnu norm]
		Calculating bins from min=0 max=5 step=0.1.
	Dim rms_2_aform: 0.000000->5.000000, step 0.100000, 50 bins.
		Calculating bins from min=0 max=10 step=0.1.
	Dim dist_sugar_ox: 0.000000->10.000000, step 0.100000, 100 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 5000
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  6: [hist g1,-180,180,1 out dihed_g1-hist.dat name gamma_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim g1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  7: [hist d1,-180,180,1 out dihed_d1-hist.dat name delta_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim d1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  8: [hist e1,-180,180,1 out dihed_e1-hist.dat name epsilon_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim e1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  9: [hist z1,-180,180,1 out dihed_z1-hist.dat name zeta_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim z1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  10: [hist c1,-180,180,1 out dihed_c1-hist.dat name chi_1 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim c1: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  11: [hist a2,-180,180,1 out dihed_a2-hist.dat name alpha_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim a2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  12: [hist b2,-180,180,1 out dihed_b2-hist.dat name beta_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim b2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  13: [hist g2,-180,180,1 out dihed_g2-hist.dat name gamma_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim g2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  14: [hist d2,-180,180,1 out dihed_d2-hist.dat name delta_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim d2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175
  15: [hist c2,-180,180,1 out dihed_c2-hist.dat name chi_2 norm]
		Calculating bins from min=-180 max=180 step=1.
	Dim c2: -180.000000->180.000000, step 1.000000, 360 bins.
	Hist: 3175 data points in each dimension.
	Hist: Allocating histogram, total bins = 360
	Histogram: Normalizing sum of bin populations to 1.0
	           Sum over all bins is 3175

TIME: Analyses took 0.0010 seconds.

DATASETS (36 total):
	rms_2_aform "rms_2_aform" (double, rms), size is 3175
	dist_sugar_ox "dist_sugar_ox" (double, distance), size is 3175
	dist_N3-O5p "dist_N3-O5p" (double, distance), size is 3175
	COM "COM" (double, distance), size is 3175
	g1 "g1" (double, torsion(gamma)), size is 3175
	d1 "d1" (double, torsion(delta)), size is 3175
	e1 "e1" (double, torsion(epsilon)), size is 3175
	z1 "z1" (double, torsion(zeta)), size is 3175
	c1 "c1" (double, torsion(chin)), size is 3175
	a2 "a2" (double, torsion(alpha)), size is 3175
	b2 "b2" (double, torsion(beta)), size is 3175
	g2 "g2" (double, torsion(gamma)), size is 3175
	d2 "d2" (double, torsion(delta)), size is 3175
	c2 "c2" (double, torsion(chin)), size is 3175
	AVERAGE_00016[avg] "AVERAGE_00016[avg]" (double), size is 1
	AVERAGE_00016[sd] "AVERAGE_00016[sd]" (double), size is 1
	AVERAGE_00016[ymin] "AVERAGE_00016[ymin]" (double), size is 1
	AVERAGE_00016[ymax] "AVERAGE_00016[ymax]" (double), size is 1
	AVERAGE_00016[yminidx] "AVERAGE_00016[yminidx]" (integer), size is 1
	AVERAGE_00016[ymaxidx] "AVERAGE_00016[ymaxidx]" (integer), size is 1
	AVERAGE_00016[names] "AVERAGE_00016[names]" (string), size is 1
	RMSD "RMSD" (double), size is 50
	CoM "CoM" (double), size is 100
	Hist_00025 "Hist_00025" (double), size is 100
	Hist_00026 "Hist_00026" (double), size is 100
	Hist_00027 "Hist_00027" (double matrix), size is 5000
	gamma_1 "gamma_1" (double), size is 360
	delta_1 "delta_1" (double), size is 360
	epsilon_1 "epsilon_1" (double), size is 360
	zeta_1 "zeta_1" (double), size is 360
	chi_1 "chi_1" (double), size is 360
	alpha_2 "alpha_2" (double), size is 360
	beta_2 "beta_2" (double), size is 360
	gamma_2 "gamma_2" (double), size is 360
	delta_2 "delta_2" (double), size is 360
	chi_2 "chi_2" (double), size is 360

DATAFILES (16 total):
  avg-rmsd-all.dat (Standard Data File):  AVERAGE_00016[avg] AVERAGE_00016[sd] AVERAGE_00016[ymin] AVERAGE_00016[ymax] AVERAGE_00016[yminidx] AVERAGE_00016[ymaxidx] AVERAGE_00016[names]
  rmsd-hist.dat (Standard Data File):  RMSD
  COM-hist.dat (Standard Data File):  CoM
  distO2O4-hist.dat (Standard Data File):  Hist_00025
  distN3-O5p-hist.dat (Standard Data File):  Hist_00026
  2dhist_rms-dist.gnu (Gnuplot File):  Hist_00027
  dihed_g1-hist.dat (Standard Data File):  gamma_1
  dihed_d1-hist.dat (Standard Data File):  delta_1
  dihed_e1-hist.dat (Standard Data File):  epsilon_1
  dihed_z1-hist.dat (Standard Data File):  zeta_1
  dihed_c1-hist.dat (Standard Data File):  chi_1
  dihed_a2-hist.dat (Standard Data File):  alpha_2
  dihed_b2-hist.dat (Standard Data File):  beta_2
  dihed_g2-hist.dat (Standard Data File):  gamma_2
  dihed_d2-hist.dat (Standard Data File):  delta_2
  dihed_c2-hist.dat (Standard Data File):  chi_2

RUN TIMING:
TIME:		Init               : 0.0000 s (  0.03%)
TIME:		Trajectory Process : 0.0043 s (  8.67%)
TIME:		Action Post        : 0.0000 s (  0.00%)
TIME:		Analysis           : 0.0010 s (  2.01%)
TIME:		Data File Write    : 0.0441 s ( 89.24%)
TIME:		Other              : 0.0000 s (  0.00%)
TIME:	Run Total 0.0494 s
---------- RUN END ---------------------------------------------------
TIME: Total execution time: 0.0753 seconds.
--------------------------------------------------------------------------------
To cite CPPTRAJ use:
Daniel R. Roe and Thomas E. Cheatham, III, "PTRAJ and CPPTRAJ: Software for
  Processing and Analysis of Molecular Dynamics Trajectory Data". J. Chem.
  Theory Comput., 2013, 9 (7), pp 3084-3095.