CPPTRAJ: Trajectory Analysis. V15.00
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| Date/time: 11/24/15  13:32:03
| Available memory: 48619 MB

	Reading '../../../tip3p/ff12sb/run1/build/noWAt.topo.hmr' as Amber Topology
INPUT: Reading Input from file pt-tors.in
  [trajin ../ctraj.c2]
	Reading '../ctraj.c2' as Amber NetCDF
  [dihedral d1 out tors1.dat :1@C5' :1@C4' :1@C3' :1@O3']
    DIHEDRAL: [:1@C5']-[:1@C4']-[:1@C3']-[:1@O3']
              Output range is -180 to 180 degrees.
  [dihedral e1 out tors1.dat :1@C4' :1@C3' :1@O3' :2@P]
    DIHEDRAL: [:1@C4']-[:1@C3']-[:1@O3']-[:2@P]
              Output range is -180 to 180 degrees.
  [dihedral z1 out tors1.dat :1@C3' :1@O3' :2@P :2@O5']
    DIHEDRAL: [:1@C3']-[:1@O3']-[:2@P]-[:2@O5']
              Output range is -180 to 180 degrees.
  [dihedral a2 out tors1.dat :1@O3' :2@P :2@O5' :2@C5']
    DIHEDRAL: [:1@O3']-[:2@P]-[:2@O5']-[:2@C5']
              Output range is -180 to 180 degrees.
  [dihedral b2 out tors1.dat :2@P :2@O5' :2@C5' :2@C4']
    DIHEDRAL: [:2@P]-[:2@O5']-[:2@C5']-[:2@C4']
              Output range is -180 to 180 degrees.
  [dihedral g2 out tors1.dat :2@O5' :2@C5' :2@C4' :2@C3']
    DIHEDRAL: [:2@O5']-[:2@C5']-[:2@C4']-[:2@C3']
              Output range is -180 to 180 degrees.
  [dihedral d2' out tors1.dat :2@C5' :2@C4' :2@C3' :2@O3']
    DIHEDRAL: [:2@C5']-[:2@C4']-[:2@C3']-[:2@O3']
              Output range is -180 to 180 degrees.
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES:
 0: 'noWAt.topo.hmr', 59 atoms, 2 res, box: Orthogonal, 1 mol, 80783 frames

INPUT TRAJECTORIES:
 0: 'ctraj.c2' is a NetCDF AMBER trajectory, Parm noWAt.topo.hmr (Orthogonal box) (reading 80783 of 80783)
  Coordinate processing will occur on 80783 frames.
TIME: Run Initialization took 0.0000 seconds.

BEGIN TRAJECTORY PROCESSING:
.....................................................
ACTION SETUP FOR PARM 'noWAt.topo.hmr' (7 actions):
  0: [dihedral d1 out tors1.dat :1@C5' :1@C4' :1@C3' :1@O3']
	 [:1@C5'](1) [:1@C4'](1) [:1@C3'](1) [:1@O3'](1)
  1: [dihedral e1 out tors1.dat :1@C4' :1@C3' :1@O3' :2@P]
	 [:1@C4'](1) [:1@C3'](1) [:1@O3'](1) [:2@P](1)
  2: [dihedral z1 out tors1.dat :1@C3' :1@O3' :2@P :2@O5']
	 [:1@C3'](1) [:1@O3'](1) [:2@P](1) [:2@O5'](1)
  3: [dihedral a2 out tors1.dat :1@O3' :2@P :2@O5' :2@C5']
	 [:1@O3'](1) [:2@P](1) [:2@O5'](1) [:2@C5'](1)
  4: [dihedral b2 out tors1.dat :2@P :2@O5' :2@C5' :2@C4']
	 [:2@P](1) [:2@O5'](1) [:2@C5'](1) [:2@C4'](1)
  5: [dihedral g2 out tors1.dat :2@O5' :2@C5' :2@C4' :2@C3']
	 [:2@O5'](1) [:2@C5'](1) [:2@C4'](1) [:2@C3'](1)
  6: [dihedral d2' out tors1.dat :2@C5' :2@C4' :2@C3' :2@O3']
	 [:2@C5'](1) [:2@C4'](1) [:2@C3'](1) [:2@O3'](1)
----- ctraj.c2 (1-80783, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 80783 frames and processed 80783 frames.
TIME: Trajectory processing: 0.1284 s
TIME: Avg. throughput= 629155.9903 frames / second.

ACTION OUTPUT:

DATASETS:
  7 data sets:
	d1 "d1" (double, torsion), size is 80783
	e1 "e1" (double, torsion), size is 80783
	z1 "z1" (double, torsion), size is 80783
	a2 "a2" (double, torsion), size is 80783
	b2 "b2" (double, torsion), size is 80783
	g2 "g2" (double, torsion), size is 80783
	d2' "d2'" (double, torsion), size is 80783

DATAFILES:
  tors1.dat (Standard Data File):  d1 e1 z1 a2 b2 g2 d2'
---------- RUN END ---------------------------------------------------
TIME: Total execution time: 0.5375 seconds.
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To cite CPPTRAJ use:
Daniel R. Roe and Thomas E. Cheatham, III, "PTRAJ and CPPTRAJ: Software for
  Processing and Analysis of Molecular Dynamics Trajectory Data". J. Chem.
  Theory Comput., 2013, 9 (7), pp 3084-3095.