CPPTRAJ: Trajectory Analysis. V15.00
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| Date/time: 11/16/15  11:23:49
| Available memory: 121997 MB

INPUT: Reading Input from file pt-298.in
  [parm ../../build/full.topo.hmr [traj]]
	Reading '../../build/full.topo.hmr' as Amber Topology
	CHAMBER topology: 1: CHARMM 361       *  \\\\ CHARMM36 All-Hydrogen Nucleic Acid Topology File ///
  [strip :WAT,Na+,K+,Cl-]
    STRIP: Stripping atoms in mask [:WAT,Na+,K+,Cl-]
  [autoimage origin]
    AUTOIMAGE: To origin based on center of mass, anchor is first molecule.
  [trajin ../../traj.1.01 remdtraj remdtrajtemp 298.41 trajnames ../../traj.1.02,../../traj.1.03,../../traj.1.04,../../traj.1.05,../../traj.1.06,../../traj.1.07,../../traj.1.08,../../traj.1.09,../../traj.1.10,../../traj.1.11,../../traj.1.12,../../traj.1.13,../../traj.1.14,../../traj.1.15,../../traj.1.16,../../traj.1.17,../../traj.1.18,]
  [trajout 298.nc netcdf]
	Writing '298.nc' as Amber NetCDF
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES:
 0: [traj] 'full.topo.hmr', 3295 atoms, 1088 res, box: Orthogonal, 1087 mol, 1075 solvent, 50000 frames

INPUT TRAJECTORIES:
 0: REMD trajectories (18 total), lowest replica 'traj.1.01' (reading 50000 of 50000)
	Looking for frames at 298.41 K
  Coordinate processing will occur on 50000 frames.

OUTPUT TRAJECTORIES:
  '298.nc' is a NetCDF AMBER trajectory, Parm [traj]: Writing 50000 frames (1-Last, 1)
TIME: Run Initialization took 0.0001 seconds.

BEGIN TRAJECTORY PROCESSING:
	REMD: OPENING 18 REMD TRAJECTORIES
.....................................................
ACTION SETUP FOR PARM '[traj]' (2 actions):
  0: [strip :WAT,Na+,K+,Cl-]
	Stripping 3236 atoms.
	Stripped parm: 'full.topo.hmr', 59 atoms, 2 res, box: Orthogonal, 1 mol
  1: [autoimage origin]
	Anchor molecule is 1
	0 molecules are mobile.
----- traj.1.01 (1-50000, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 50000 frames and processed 50000 frames.
TIME: Trajectory processing: 707.9993 s
TIME: Avg. throughput= 70.6215 frames / second.

ACTION OUTPUT:
---------- RUN END ---------------------------------------------------
TIME: Total execution time: 726.3275 seconds.
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To cite CPPTRAJ use:
Daniel R. Roe and Thomas E. Cheatham, III, "PTRAJ and CPPTRAJ: Software for
  Processing and Analysis of Molecular Dynamics Trajectory Data". J. Chem.
  Theory Comput., 2013, 9 (7), pp 3084-3095.