CPPTRAJ: Trajectory Analysis. V15.00 ___ ___ ___ ___ | \/ | \/ | \/ | _|_/\_|_/\_|_/\_|_ | Date/time: 11/16/15 11:35:55 | Available memory: 88609.7 MB INPUT: Reading Input from file pt-parmstrip.in [parm ../../build/full.topo.hmr] Reading '../../build/full.topo.hmr' as Amber Topology CHAMBER topology: 1: CHARMM 361 * \\\\ CHARMM36 All-Hydrogen Nucleic Acid Topology File /// [parmstrip :WAT,Cl-,Na+] Stripping atoms in mask [:WAT,Cl-,Na+] (3236) from full.topo.hmr Stripped parm: 'full.topo.hmr', 59 atoms, 2 res, box: Orthogonal, 1 mol [parmwrite out ../../build/noWAt.topo.hmr] Writing topology 0 (full.topo.hmr) to '../../build/noWAt.topo.hmr' with format Amber Topology TIME: Total execution time: 0.0483 seconds. -------------------------------------------------------------------------------- To cite CPPTRAJ use: Daniel R. Roe and Thomas E. Cheatham, III, "PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data". J. Chem. Theory Comput., 2013, 9 (7), pp 3084-3095.