./ | | \. .:( |i __ j| ):`. .' `._ |`::::'| _.' `. .' "---.j `::' f.---" `. _____/ ___ ____ __ __ ____ ___ | \ | | | `__'| \ / || | | \ | .-. | .' `| | .-. |-/| \/ || ___| | . \ | |_| | | i | | |_| /"":| || | | | \ \ | / | .^. | | /::::| || |__. | | \ \ | ----' | | | | | \ :: | || __| | | | ) | | .' ''' `.| |\ \ | i i j| | . | / / | | | _ || | \ \ | |\/| || |__. | |. / . [| | | | | || | \ \ | | | || | | / ]. ] `--' :--' `--::--' \_|`--' ::--"|____|-"-- / :[ | __ ::-'''`.:' "--. .----::.----:: ,.---._ :| [ .-"" "`' \ / " `' `-. :]. ]:.' \/ `.:[ |/ \| ParmEd: a Parameter file Editor ['../../../../../scripts/parmed_Chen-Garcia.in'] Reading actions from ../../../../../scripts/parmed_Chen-Garcia.in Adding prmtop full-ff99.topo to parm list. full-ff99.topo is the active parm. ATOM NUMBER NAME TYPE --------------------------------------------- ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 11 N1 N* : Type index: 7 ATOM 18 N3 NA : Type index: 7 ATOM 41 N1 N* : Type index: 7 ATOM 48 N3 NA : Type index: 7 ATOM NUMBER NAME TYPE --------------------------------------------- ATOM 17 O4 O : Type index: 12 ATOM 21 O2 O : Type index: 12 ATOM 47 O4 O : Type index: 12 ATOM 51 O2 O : Type index: 12 Setting LJ @%CA-@%OW pairwise interaction to have Rmin = 3.67622 and Epsilon = 0.10293 Setting LJ @%NA-@%OW pairwise interaction to have Rmin = 3.59221 and Epsilon = 0.14472 Setting LJ @%O-@%OW pairwise interaction to have Rmin = 3.42941 and Epsilon = 0.16085 Outputting Amber topology file full.topo Done!