. . . . . . . . . + . . . : . .. :. .___---------___. . . . . :.:. _".^ .^ ^. '.. :"-_. . . : . . .:../: . .^ :.:\. . . :: +. :.:/: . . . . . .:\ . : . . _ :::/: . ^ . . .:\ .. . . . - : :.:./. . .:\ . . . :..|: . . ^. .:| . . : : ..|| . . . !:| . . . . ::. ::\( . :)/ . . : . : .:.|. ###### .#######::| :.. . :- : .: ::|.####### ..########:| . . . .. . .. :\ ######## :######## :/ . .+ :: : -.:\ ######## . ########.:/ . .+ . . . . :.:\. ####### #######..:/ :: . . . . ::.:..:.\ . . ..:/ . . . .. : -::::.\. | | . .:/ . : . . .-:.":.::.\ ..:/ .~~~~~~~~~~~. . -. . . . .: .:::.:.\. .:/,: Prepare to \ . . . : : ....::_:..:\ ___. :/ . be | . . . .:. .. . .: :.:.:\ :/ \ P A R M E D | + . . : . ::. :.:. .:.|\ .:/| \~~~~~~~~~~~' . + . . ...:: ..| --.:| . . . . . . . ... :..:.."( ..)" . . . : . .: ::/ . .::\ ParmEd: a Parameter file Editor ['../../../../../scripts/parmed_dacP_dinuc.in'] Reading actions from ../../../../../scripts/parmed_dacP_dinuc.in Adding prmtop tmp.topo to parm list. tmp.topo is the active parm. Changing :2@OP1 Lennard-Jones well depth from 0.2100 to 0.2100 (kal/mol) and radius from 1.6612 to 1.7493 (Angstroms) Changing :2@OP2 Lennard-Jones well depth from 0.2100 to 0.2100 (kal/mol) and radius from 1.7493 to 1.7493 (Angstroms) Changing :2@O5' Lennard-Jones well depth from 0.1700 to 0.1700 (kal/mol) and radius from 1.6837 to 1.7718 (Angstroms) Changing :1@O3' Lennard-Jones well depth from 0.1700 to 0.1700 (kal/mol) and radius from 1.7718 to 1.7718 (Angstroms) Making atoms @O4' into a new LJ atom type Outputting Amber topology file full.topo.hmr Done!