Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. set sim = 1PO5_cpz/angle2 set mpirun = mpirun -np 32 -machinefile /uufs/updraft.arches/host/var/torque/aux//37163.uprm.privatearch.arches set pmemd = ~/pmemd-a10-updraft set cur = 11 set pre = 10 cd ~/biodata2/P450/1PO5_cpz/angle2 mpirun -np 32 -machinefile /uufs/updraft.arches/host/var/torque/aux//37163.uprm.privatearch.arches /uufs/chpc.utah.edu/common/home/u0181375/pmemd-a10-updraft -O -i mdin -o mdout.11 -p prmtop -c restrt.10 -r restrt.11 -x traj.11 -e ener.11 MPIRUN.up002: MPI progress Quiescence Detected after 900 seconds. MPIRUN.up002: 32 out of 32 ranks showed no MPI send or receive progress. MPIRUN.up002: Per-rank details are the following: MPIRUN.up002: Rank 0 (up002 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 1 (up002 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 2 (up002 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 3 (up002 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 4 (up002 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 5 (up002 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 6 (up002 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 7 (up002 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 8 (up033 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 9 (up033 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 10 (up033 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 11 (up033 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 12 (up033 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 13 (up033 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 14 (up033 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 15 (up033 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 16 (up040 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 17 (up040 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 18 (up040 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 19 (up040 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 20 (up040 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 21 (up040 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 22 (up040 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 23 (up040 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 24 (up042 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 25 (up042 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 26 (up042 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 27 (up042 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 28 (up042 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 29 (up042 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 30 (up042 ) caused MPI progress Quiescence. MPIRUN.up002: Rank 31 (up042 ) caused MPI progress Quiescence. MPIRUN.up002: both MPI progress and Ping Quiescence Detected after 900 seconds. MPIRUN.up002: 32 out of 32 ranks showed no MPI send or receive progress. MPIRUN.up002: 32 out of 32 ranks could not return a ping request. MPIRUN.up002: Per-rank details are the following: MPIRUN.up002: Rank 0 (up002 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 1 (up002 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 2 (up002 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 3 (up002 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 4 (up002 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 5 (up002 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 6 (up002 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 7 (up002 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 8 (up033 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 9 (up033 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 10 (up033 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 11 (up033 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 12 (up033 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 13 (up033 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 14 (up033 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 15 (up033 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 16 (up040 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 17 (up040 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 18 (up040 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 19 (up040 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 20 (up040 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 21 (up040 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 22 (up040 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 23 (up040 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 24 (up042 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 25 (up042 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 26 (up042 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 27 (up042 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 28 (up042 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 29 (up042 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 30 (up042 ) caused both MPI progress and Ping Quiescence. MPIRUN.up002: Rank 31 (up042 ) caused both MPI progress and Ping Quiescence.  lib-4221 : UNRECOVERABLE library error An internal Fortran unit table contains an unknown file structure. Encountered during a REWIND on unit 16 Fortran unit 16 is not connected pmemd-a10-updraft:6427 terminated with signal 6 at PC=2a9604626d SP=7fbfebcb08. Backtrace: /lib64/tls/libc.so.6(gsignal+0x3d)[0x2a9604626d] /lib64/tls/libc.so.6(abort+0xfe)[0x2a96047a6e] /uufs/arches/sys/pkg/pscale/3.2/lib/3.2/libpathfortran.so.1(_ferr+0xed)[0x2a959bf26d] /uufs/arches/sys/pkg/pscale/3.2/lib/3.2/libpathfortran.so.1(_REWF+0x10c)[0x2a95a7bd13] /uufs/chpc.utah.edu/common/home/u0181375/pmemd-a10-updraft(MDWRIT.in.RUNFILES_MOD+0x75)[0x4d5ad8] echo Done with 1PO5_cpz/angle2... Done with 1PO5_cpz/angle2...