Warning: no access to tty (Bad file descriptor).
Thus no job control in this shell.
set sim = 1PO5_tmi/angle2
set mpirun = mpirun -np 32 -machinefile /uufs/updraft.arches/host/var/torque/aux//37170.uprm.privatearch.arches
set pmemd = ~/pmemd-a10-updraft 
set cur = 25
set pre = 24
cd ~/biodata2/P450/1PO5_tmi/angle2
mpirun -np 32 -machinefile /uufs/updraft.arches/host/var/torque/aux//37170.uprm.privatearch.arches /uufs/chpc.utah.edu/common/home/u0181375/pmemd-a10-updraft -O -i mdin -o mdout.25 -p prmtop -c restrt.24 -r restrt.25 -x traj.25 -e ener.25
MPIRUN.up031: MPI progress Quiescence Detected after 900 seconds.
MPIRUN.up031: 32 out of 32 ranks showed no MPI send or receive progress.
MPIRUN.up031: Per-rank details are the following:
MPIRUN.up031: Rank    0 (up031           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank    1 (up031           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank    2 (up031           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank    3 (up031           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank    4 (up031           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank    5 (up031           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank    6 (up031           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank    7 (up031           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank    8 (up044           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank    9 (up044           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   10 (up044           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   11 (up044           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   12 (up044           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   13 (up044           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   14 (up044           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   15 (up044           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   16 (up068           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   17 (up068           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   18 (up068           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   19 (up068           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   20 (up068           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   21 (up068           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   22 (up068           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   23 (up068           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   24 (up077           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   25 (up077           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   26 (up077           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   27 (up077           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   28 (up077           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   29 (up077           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   30 (up077           ) caused MPI progress Quiescence.
MPIRUN.up031: Rank   31 (up077           ) caused MPI progress Quiescence.
MPIRUN.up031: both MPI progress and Ping Quiescence Detected after 900 seconds.
MPIRUN.up031: 32 out of 32 ranks showed no MPI send or receive progress.
MPIRUN.up031: 32 out of 32 ranks could not return a ping request.
MPIRUN.up031: Per-rank details are the following:
MPIRUN.up031: Rank    0 (up031           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank    1 (up031           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank    2 (up031           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank    3 (up031           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank    4 (up031           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank    5 (up031           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank    6 (up031           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank    7 (up031           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank    8 (up044           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank    9 (up044           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   10 (up044           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   11 (up044           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   12 (up044           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   13 (up044           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   14 (up044           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   15 (up044           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   16 (up068           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   17 (up068           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   18 (up068           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   19 (up068           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   20 (up068           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   21 (up068           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   22 (up068           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   23 (up068           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   24 (up077           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   25 (up077           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   26 (up077           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   27 (up077           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   28 (up077           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   29 (up077           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   30 (up077           ) caused both MPI progress and Ping Quiescence.
MPIRUN.up031: Rank   31 (up077           ) caused both MPI progress and Ping Quiescence.
 wrapping first mol.: 59.383562223740029 -41.990513186735065 72.729714012039665
UNRECOVERABLE error on system request
lib-25: Inappropriate ioctl for device
Encountered during a sequential formatted WRITE to unit 12
Fortran unit 12 is not connected

pmemd-a10-updraft:9243 terminated with signal 6 at PC=2a9604626d SP=7fbfebb958.  Backtrace:
*** glibc detected *** corrupted double-linked list: 0x0000000000798cd0 ***

pmemd-a10-updraft:9243 terminated with signal 6 at PC=2a9604626d SP=40400918.  Backtrace:
/lib64/tls/libc.so.6(gsignal+0x3d)[0x2a9604626d]
/lib64/tls/libc.so.6(abort+0xfe)[0x2a96047a6e]
/uufs/arches/sys/pkg/pscale/3.2/lib/3.2/libpathfortran.so.1(_ferr+0xed)[0x2a959bf26d]
/uufs/arches/sys/pkg/pscale/3.2/lib/3.2/libpathfortran.so.1(_sw_endrec+0x16e)[0x2a95ab3fb9]
/uufs/arches/sys/pkg/pscale/3.2/lib/3.2/libpathfortran.so.1(_wrfmt+0xd75)[0x2a95ab9835]
/uufs/arches/sys/pkg/pscale/3.2/lib/3.2/libpathfortran.so.1(_xfer_iolist+0x4a5)[0x2a959b7465]
/uufs/arches/sys/pkg/pscale/3.2/lib/3.2/libpathfortran.so.1(_FWF+0x3fc)[0x2a95ab4f28]
/uufs/chpc.utah.edu/common/home/u0181375/pmemd-a10-updraft(FORMATTED_CORPAC.in.RUNFILES_MOD+0x385)[0x4d57aa]
/lib64/tls/libc.so.6(gsignal+0x3d)[0x2a9604626d]
/lib64/tls/libc.so.6(abort+0xfe)[0x2a96047a6e]
/lib64/tls/libc.so.6[0x2a9607b5f1]
/lib64/tls/libc.so.6[0x2a96081332]
/lib64/tls/libc.so.6(__libc_free+0x76)[0x2a96081596]
/uufs/arches/sys/pkg/pscale/3.2/lib/3.2/libpathfortran.so.1(_unit_close+0x1aa)[0x2a95ab0bf6]
/uufs/arches/sys/pkg/pscale/3.2/lib/3.2/libpathfortran.so.1(_fcleanup+0xb3)[0x2a959be63b]
/lib64/tls/libc.so.6(exit+0x65)[0x2a96048c95]
/usr/lib64/libmpi_infinipath.so.1[0x2a9626047b]
/usr/lib64/libmpi_infinipath.so.1[0x2a96260a12]
/lib64/tls/libpthread.so.0[0x2a9648a137]
/lib64/tls/libc.so.6(__clone+0x73)[0x2a960e1883]
echo Done with 1PO5_tmi/angle2...
Done with 1PO5_tmi/angle2...