Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. set sim = 1SUO_tmi/angle set mpirun = mpirun -np 64 -machinefile /uufs/updraft.arches/host/var/torque/aux//39775.uprm.privatearch.arches set pmemd = ~/pmemd-a10-updraft set cur = 20 set pre = 19 cd ~/biodata2/P450/1SUO_tmi/angle mpirun -np 64 -machinefile /uufs/updraft.arches/host/var/torque/aux//39775.uprm.privatearch.arches /uufs/chpc.utah.edu/common/home/u0181375/pmemd-a10-updraft -O -i mdin -o mdout.20 -p prmtop -c restrt.19 -r restrt.20 -x traj.20 -e ener.20 MPIRUN.up003: MPI progress Quiescence Detected after 900 seconds. MPIRUN.up003: 64 out of 64 ranks showed no MPI send or receive progress. MPIRUN.up003: Per-rank details are the following: MPIRUN.up003: Rank 0 (up003 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 1 (up003 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 2 (up003 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 3 (up003 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 4 (up003 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 5 (up003 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 6 (up003 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 7 (up003 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 8 (up009 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 9 (up009 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 10 (up009 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 11 (up009 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 12 (up009 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 13 (up009 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 14 (up009 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 15 (up009 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 16 (up016 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 17 (up016 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 18 (up016 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 19 (up016 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 20 (up016 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 21 (up016 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 22 (up016 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 23 (up016 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 24 (up021 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 25 (up021 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 26 (up021 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 27 (up021 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 28 (up021 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 29 (up021 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 30 (up021 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 31 (up021 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 32 (up034 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 33 (up034 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 34 (up034 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 35 (up034 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 36 (up034 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 37 (up034 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 38 (up034 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 39 (up034 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 40 (up036 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 41 (up036 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 42 (up036 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 43 (up036 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 44 (up036 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 45 (up036 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 46 (up036 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 47 (up036 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 48 (up058 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 49 (up058 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 50 (up058 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 51 (up058 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 52 (up058 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 53 (up058 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 54 (up058 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 55 (up058 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 56 (up064 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 57 (up064 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 58 (up064 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 59 (up064 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 60 (up064 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 61 (up064 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 62 (up064 ) caused MPI progress Quiescence. MPIRUN.up003: Rank 63 (up064 ) caused MPI progress Quiescence. MPIRUN.up003: both MPI progress and Ping Quiescence Detected after 900 seconds. MPIRUN.up003: 64 out of 64 ranks showed no MPI send or receive progress. MPIRUN.up003: 64 out of 64 ranks could not return a ping request. MPIRUN.up003: Per-rank details are the following: MPIRUN.up003: Rank 0 (up003 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 1 (up003 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 2 (up003 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 3 (up003 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 4 (up003 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 5 (up003 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 6 (up003 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 7 (up003 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 8 (up009 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 9 (up009 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 10 (up009 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 11 (up009 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 12 (up009 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 13 (up009 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 14 (up009 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 15 (up009 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 16 (up016 ) caused both MPI progress and Ping Quiescence. MPIRUN.up003: Rank 17 (up016 ) caused both MPI progress and Ping Quiescence. =>> PBS: job killed: walltime 86427 exceeded limit 86400 Terminated Killed by signal 15. Killed by signal 15. Killed by signal 15. Killed by signal 15. Killed by signal 15.