Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. set sim = 2BDM_cpz/angle set mpirun = mpirun -np 32 -machinefile /uufs/updraft.arches/host/var/torque/aux//36005.uprm.privatearch.arches set pmemd = ~/pmemd-a10-updraft set cur = 29 set pre = 28 cd ~/biodata2/P450/2BDM_cpz/angle mpirun -np 32 -machinefile /uufs/updraft.arches/host/var/torque/aux//36005.uprm.privatearch.arches /uufs/chpc.utah.edu/common/home/u0181375/pmemd-a10-updraft -O -i mdin -o mdout.29 -p prmtop -c restrt.28 -r restrt.29 -x traj.29 -e ener.29 MPIRUN.up001: MPI progress Quiescence Detected after 900 seconds. MPIRUN.up001: 32 out of 32 ranks showed no MPI send or receive progress. MPIRUN.up001: Per-rank details are the following: MPIRUN.up001: Rank 0 (up001 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 1 (up001 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 2 (up001 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 3 (up001 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 4 (up001 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 5 (up001 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 6 (up001 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 7 (up001 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 8 (up028 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 9 (up028 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 10 (up028 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 11 (up028 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 12 (up028 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 13 (up028 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 14 (up028 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 15 (up028 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 16 (up035 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 17 (up035 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 18 (up035 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 19 (up035 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 20 (up035 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 21 (up035 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 22 (up035 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 23 (up035 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 24 (up059 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 25 (up059 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 26 (up059 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 27 (up059 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 28 (up059 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 29 (up059 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 30 (up059 ) caused MPI progress Quiescence. MPIRUN.up001: Rank 31 (up059 ) caused MPI progress Quiescence. MPIRUN.up001: both MPI progress and Ping Quiescence Detected after 900 seconds. MPIRUN.up001: 32 out of 32 ranks showed no MPI send or receive progress. MPIRUN.up001: 32 out of 32 ranks could not return a ping request. MPIRUN.up001: Per-rank details are the following: MPIRUN.up001: Rank 0 (up001 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 1 (up001 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 2 (up001 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 3 (up001 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 4 (up001 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 5 (up001 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 6 (up001 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 7 (up001 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 8 (up028 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 9 (up028 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 10 (up028 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 11 (up028 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 12 (up028 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 13 (up028 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 14 (up028 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 15 (up028 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 16 (up035 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 17 (up035 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 18 (up035 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 19 (up035 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 20 (up035 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 21 (up035 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 22 (up035 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 23 (up035 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 24 (up059 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 25 (up059 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 26 (up059 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 27 (up059 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 28 (up059 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 29 (up059 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 30 (up059 ) caused both MPI progress and Ping Quiescence. MPIRUN.up001: Rank 31 (up059 ) caused both MPI progress and Ping Quiescence. echo Done with 2BDM_cpz/angle... Done with 2BDM_cpz/angle...