Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. set sim = 2BDM_tmionly/angle set mpirun = mpirun -np 32 -machinefile /uufs/updraft.arches/host/var/torque/aux//39776.uprm.privatearch.arches set pmemd = ~/pmemd-a10-updraft set cur = 28 set pre = 27 cd ~/biodata2/P450/2BDM_tmionly/angle mpirun -np 32 -machinefile /uufs/updraft.arches/host/var/torque/aux//39776.uprm.privatearch.arches /uufs/chpc.utah.edu/common/home/u0181375/pmemd-a10-updraft -O -i mdin -o mdout.28 -p prmtop -c restrt.27 -r restrt.28 -x traj.28 -e ener.28 MPIRUN.up007: MPI progress Quiescence Detected after 900 seconds. MPIRUN.up007: 32 out of 32 ranks showed no MPI send or receive progress. MPIRUN.up007: Per-rank details are the following: MPIRUN.up007: Rank 0 (up007 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 1 (up007 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 2 (up007 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 3 (up007 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 4 (up007 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 5 (up007 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 6 (up007 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 7 (up007 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 8 (up014 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 9 (up014 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 10 (up014 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 11 (up014 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 12 (up014 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 13 (up014 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 14 (up014 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 15 (up014 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 16 (up015 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 17 (up015 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 18 (up015 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 19 (up015 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 20 (up015 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 21 (up015 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 22 (up015 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 23 (up015 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 24 (up020 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 25 (up020 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 26 (up020 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 27 (up020 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 28 (up020 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 29 (up020 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 30 (up020 ) caused MPI progress Quiescence. MPIRUN.up007: Rank 31 (up020 ) caused MPI progress Quiescence. MPIRUN.up007: both MPI progress and Ping Quiescence Detected after 900 seconds. MPIRUN.up007: 32 out of 32 ranks showed no MPI send or receive progress. MPIRUN.up007: 32 out of 32 ranks could not return a ping request. MPIRUN.up007: Per-rank details are the following: MPIRUN.up007: Rank 0 (up007 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 1 (up007 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 2 (up007 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 3 (up007 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 4 (up007 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 5 (up007 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 6 (up007 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 7 (up007 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 8 (up014 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 9 (up014 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 10 (up014 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 11 (up014 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 12 (up014 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 13 (up014 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 14 (up014 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 15 (up014 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 16 (up015 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 17 (up015 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 18 (up015 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 19 (up015 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 20 (up015 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 21 (up015 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 22 (up015 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 23 (up015 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 24 (up020 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 25 (up020 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 26 (up020 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 27 (up020 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 28 (up020 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 29 (up020 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 30 (up020 ) caused both MPI progress and Ping Quiescence. MPIRUN.up007: Rank 31 (up020 ) caused both MPI progress and Ping Quiescence. =>> PBS: job killed: walltime 86431 exceeded limit 86400 Terminated